Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0152 ATGATCTTCAGTCTTCGCTTTCCCATTCATCACGCTCTTCGCACAAACCATACCTATTATCTTCAATTTGAGCCTCGATTCTTCCGTCATTTGTTACAAGGCTCCGACTCCGACCATAATAAAATTTCGGAAGGGCATTACAGTAAAGAGGATGCGGGGTATTACTTACCATCGCCATCGACTTCGGGGGATGCTTGGAACCAGAACCAGAACCTGAACCACAACGAGAATGAAGATATTGATCGTGCTATTGCACTGTCTCTAGTGGAAGAGAGTCAAAAAACAAACAATGTAAACGACTACAGATCACAATCACAATTAGAAGAAGATGAACAACTTGCTAGAGCTATAGAACAAAGTCTAAATGTGGAGTCTCCTCCTAGATATGGAAACGAAAATATGTATCAACCAGTTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATACTGAGATTGGTTTTGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTTCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTACGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTTTGGATCCAGAAATACTGTCCTACTCATGAACATGATGGTACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGTCGCAAGAGGCAGGATATATTCCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTTGATTCTTCTATCATGGATACTAATGAATGCCAACCCCTTCATGGCGATATACAAAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAGTTCCACTTCTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGAGAGGAATGGCCACTATCACATGCCAGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTTTCTCGAGACGACCTAGACTTGGGACAATGGACATGAGAGCACAGGTGTACAGACCGACTACACGCTGTGATGTGACTGCAATTCTCATTTTATATGGTCTTCCAAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTTAAAGGTTATCGGACGCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTATGGCCCATATGTGGTTGGAATCTGAACTTTCTTCTGCATCAGACAGCAACTTTGTATCAGCCTCATCCTCATCTGCATCACATACATCTAGAAAAGGTAAAAGACCTCAGTTCGAGAGGAAGCTCGGGGAGTTCTTCAAGCACCAGATCGAATCGGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATTTGGTCTACAAAGGACCCTTCACCATATCAGGATGACTGGGACTTTTCCATAA 1512 0.4398 MIFSLRFPIHHALRTNHTYYLQFEPRFFRHLLQGSDSDHNKISEGHYSKEDAGYYLPSPSTSGDAWNQNQNLNHNENEDIDRAIALSLVEESQKTNNVNDYRSQSQLEEDEQLARAIEQSLNVESPPRYGNENMYQPVQYFPMGSRICAGCYTEIGFGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPTHEHDGTPRCCSCERMESQEAGYIPLKDGRKLCLECLDSSIMDTNECQPLHGDIQRFYESLNMKLDQQVPLLLVERQALNEAREGERNGHYHMPETRGLCLSEELSTFSRRPRLGTMDMRAQVYRPTTRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVMAHMWLESELSSASDSNFVSASSSSASHTSRKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKFGLQRTLHHIRMTGTFP 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0152 503 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 75 94 IPR003903 -
Aed11g0152 503 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 108 127 IPR003903 -
Aed11g0152 503 Gene3D Cysteine Rich Protein 139 206 - -
Aed11g0152 503 SMART lim_4 147 199 IPR001781 -
Aed11g0152 503 PANTHER PROTEIN DA1-LIKE 39 503 - -
Aed11g0152 503 ProSitePatterns LIM zinc-binding domain signature. 148 182 IPR001781 -
Aed11g0152 503 ProSiteProfiles LIM domain profile. 146 206 IPR001781 -
Aed11g0152 503 Pfam LIM domain 148 202 IPR001781 -
Aed11g0152 503 PANTHER PROTEIN DA1-RELATED 2 39 503 IPR045218 -
Aed11g0152 503 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 173 - -
Aed11g0152 503 Pfam Ubiquitin interaction motif 76 88 IPR003903 -
Aed11g0152 503 Pfam Ubiquitin interaction motif 108 121 IPR003903 -
Aed11g0152 503 Pfam Protein DA1 298 499 IPR022087 -
Aed11g0152 503 CDD LIM_DA1 148 200 - -
Aed11g0152 503 SMART uim 75 94 IPR003903 -
Aed11g0152 503 SMART uim 108 127 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0152 Aed-Chr11 1185188 1192430 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed11g0152 DA1-like 2.2e-91 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0152 - - gmx:100783253 885.174