Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0150 ATGGCAAATGAGGTTGAAGAATCAACAAGCAGGTCACCCCCAAGCTCTTCCTGCTCCACCAACAGCAATAATAACAGTGATGCTGGCAACTTTGAATGCAACATTTGCTTTGACTTAGCACAGGATCCTATAATTACTCTATGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTCCACTCGCAGTCACGAGAATGCCCCGTGTGCAAGGCACTCGTTGAAGAGGAGAAGTTGGTTCCCCTGTATGGGAGAGGGAAGACATCAACAGATCCAAGATCAAAGTCTATTCCCGGCAGTGTTAAGATCCCACACCGTCCTGCTGGTCAGAGACCTGAAACCGCTCCTCCACCTGAACCAAACCCTTTTTCTCAACATGGATTTGGCTTCACAGGAGGATTTGCACCGGCATCAACTGCAAGATTAGGGAACTTCACATTTTCCGCGGGATTTGGTGGTTTTATACCATCCCTCTTTAACTTTCAGTTGCATCATGGATTGCATGATGTGCCGATGTATGGAGCAGCTGATTTTCCTTATGGATTTCCTTTTCACAATGGTCATGGTCATGGTCATGGTCATGTTCATATCCTCCACTCACAGGTCAAGGGCAACAAGATTATTATCTGA 639 0.4601 MANEVEESTSRSPPSSSCSTNSNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGSVKIPHRPAGQRPETAPPPEPNPFSQHGFGFTGGFAPASTARLGNFTFSAGFGGFIPSLFNFQLHHGLHDVPMYGAADFPYGFPFHNGHGHGHGHVHILHSQVKGNKIII 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0150 212 SMART ring_2 33 73 IPR001841 -
Aed11g0150 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 87 IPR013083 -
Aed11g0150 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 198 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed11g0150 212 MobiDBLite consensus disorder prediction 87 126 - -
Aed11g0150 212 Pfam Zinc finger, C3HC4 type (RING finger) 33 73 IPR018957 GO:0046872
Aed11g0150 212 PANTHER OS12G0636000 PROTEIN 2 198 - -
Aed11g0150 212 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Aed11g0150 212 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Aed11g0150 212 SUPERFAMILY RING/U-box 30 86 - -
Aed11g0150 212 MobiDBLite consensus disorder prediction 1 23 - -
Aed11g0150 212 CDD RING-HC_AtRMA_like 31 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0150 Aed-Chr11 1147806 1149804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0150 31 197 C3H Transcription Factor Family AT1G19310 65.000 1.36e-75 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0150 K10666 - pop:7483773 275.789