Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0089 ATGACCGATGCTGCTGCTGAAGACGCTACACGACGCCGTAATGCGGTGGCGGAGTACCGTAAGAAACTTCTTCAACACAAGGAATTGGAATCCCGAGTACGATCCGTCAGAGAGAATTTGCGTGCCTCGAAGAAAGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAAGCGTTGGACAGATCATTGGCGAAGTGCTTAGGCCTCTCGACAATGAACGCCTGATTGTTAAGGCAAGCAGCGGACCTAGGTATGTGGTTGGCTGCCGCAGTAAAGTAGATAAGGAAAAACTGACTGCTGGTACGAGAGTGGTTCTTGATATGACGACACTAACCATAATGCGAGCTCTTCCACGTGAAGTTGATCCAGTGGTTTACAATATGTTGCATGAGGATCCTGGTAATATCAGTTACTCTGCTGTTGGTGGTTTATCTGATCAGATAAGGGAATTGAGGGAATCAATTGAATTACCTCTGATGAACCCCGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCCAGGGCAATTGCTAGTAACATAGATGCTAACTTCTTGAAGGTTGTATCAAGTGCAATAATTGATAAGTATATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTCAGTGAGGGAACAAGTGCTGATCGTGAGATTCAGAGAACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGTCCTGATGTACTGGATCCTGCTCTTCTGCGTCCTGGAAGATTGGATAGAAAAATAGAAATTCCATTGCCAAATGAACAATCAAGGATGGAAATTCTTAAGATTCATGCTGCTGGTATTGCTAAGCATGGTGAAATAGATTACGAAGCTGTTGTGAAGCTTGCCGAGGGCTTTAATGGAGCTGATCTTCGAAATGTGTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTCATCCATGAAGATTTTATGAAGGCTGTTAGAAAACTGAATGATGCAAAGAAACTTGAATCCAGTGCTCACTACAGTGCTGATTTTGGCAAAGAGTAA 1203 0.4323 MTDAAAEDATRRRNAVAEYRKKLLQHKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNDAKKLESSAHYSADFGKE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0089 400 Pfam AAA+ lid domain 333 375 IPR041569 -
Aed11g0089 400 PANTHER BNAC02G30020D PROTEIN 8 400 - -
Aed11g0089 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 385 IPR027417 -
Aed11g0089 400 CDD AAA 143 310 - -
Aed11g0089 400 Coils Coil 26 60 - -
Aed11g0089 400 Gene3D - 311 381 - -
Aed11g0089 400 Gene3D - 130 310 IPR027417 -
Aed11g0089 400 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 8 400 - -
Aed11g0089 400 SMART AAA_5 173 312 IPR003593 -
Aed11g0089 400 Gene3D - 25 129 IPR012340 -
Aed11g0089 400 Pfam ATPase family associated with various cellular activities (AAA) 177 310 IPR003959 GO:0005524|GO:0016887
Aed11g0089 400 ProSitePatterns AAA-protein family signature. 280 298 IPR003960 GO:0005524|GO:0016887
Aed11g0089 400 Pfam Proteasomal ATPase OB C-terminal domain 64 119 IPR032501 -
Aed11g0089 400 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 24 381 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0089 Aed-Chr11 720691 723936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0089 136 380 Miscellaneous Gene Families AT3G47060 40.000 8.10e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0089 K03064 - gmx:100802514 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0089 11 720691 723936 Aed11g0089 11 720691 723936 ECH