Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0073 ATGGCTGGGTTCTTCTCTCTAGGAAGCAGCAGCAGGCAGAACAACAAGGCAGAAGATCAAGAAGAACAGCACGATCAAAGAGAAGACAACGCTAACAGTACTCAATTCTTGTTCAGGAACGAGGAGATCTACAACAAGGGATTCGAGATATGGCCACAATCCTCATACCACCAGAACTTGACCAACTTCTACTCCTTCGGTGTGGGCCCTAGTCGCAGAAACAACAACAACAACAACAACAGCTCCTCCAACAACAACGTAAACGACGACGTCTCTGTCTCTTTCTCGGATGAGTCCAACCGGTTCGGTTTCACGGTGATGAGGTCCGGTGGCGGCGTGGGTGGTGGGGGCGGCGGCATGAACTGTCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTCAACACCTCAGATGCCGAACTTGCTGCAAGAGTCGAGGGTTTCAGTGTCACACGCACGTTAAGAGCACTTGGGTTCCCGCGGCTAAACGCCGTGAACGACAGGAACAACTTTCTGCGTTGCAGCAACAAAACCAACAGCAACAGTTTCGAGGAGATCATTCTAAACGACACAGAGAAAGCATCGAAGCTGCTGCTGCTGCTGGTAGTGGTTCTCTAGCTTGCGTTCCAGTTCCTATCACCACCACAGGGTTGGAGCTGGGGCAATTTCCACCTGAGCTAAACTCTCCGGCGGTGTTCCGGTGTGTGAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCTTATCAAACCGCAGTGAACATAGGAGGACACGTGTTCAAGGGAATTCTCTACGACCAAGGAACGGAGGATCCTTACGCGGGTGCAAGAGGTTGTGAGGGTTCCTCCGGTGGCGGCGGTGAAGCTCAGCCACTGAATCTCATAGCCGCCACAAGCACCGCCACAACAAGCGGAAACCCTTTTGACGCTTCGCTCTACACGGCTCCGATGAACGCTTTCATGGCTGGTACGCACTTCTTCCCACCCCCAAGATCCTAA 999 0.5275 MAGFFSLGSSSRQNNKAEDQEEQHDQREDNANSTQFLFRNEEIYNKGFEIWPQSSYHQNLTNFYSFGVGPSRRNNNNNNNSSSNNNVNDDVSVSFSDESNRFGFTVMRSGGGVGGGGGGMNCQDCGNQAKKDCQHLRCRTCCKSRGFQCHTHVKSTWVPAAKRRERQEQLSALQQQNQQQQFRGDHSKRHRESIEAAAAAGSGSLACVPVPITTTGLELGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGTEDPYAGARGCEGSSGGGGEAQPLNLIAATSTATTSGNPFDASLYTAPMNAFMAGTHFFPPPRS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0073 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 330 IPR007818 GO:0003700|GO:0006355
Aed11g0073 332 MobiDBLite consensus disorder prediction 71 94 - -
Aed11g0073 332 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 221 268 IPR006511 -
Aed11g0073 332 MobiDBLite consensus disorder prediction 15 29 - -
Aed11g0073 332 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 330 - -
Aed11g0073 332 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 121 163 IPR006510 -
Aed11g0073 332 Coils Coil 10 30 - -
Aed11g0073 332 Pfam Domain of unknown function (DUF702) 119 270 - -
Aed11g0073 332 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0073 Aed-Chr11 586680 588310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0073 1 331 C2H2 Transcription Factor Family AT1G19790 45.628 2.27e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aed11g0073 DUF702 1.7e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0073 - - gmx:100807290 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0073 11 586680 588310 Aed11g0073 11 586680 588310 ECH
Aed11g0073 11 586680 588310 Aed9g0251 9 1802273 1803694 PCT