Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0027 ATGTGCCCTCGTTCTCTACTCCCTTATTTAAACACATACCTTATGTACTTGGAAATGACAATAATTGCAAACACAAATTCTAATTCTAGTCTCATCATTCGCCATTCAGCAAGCAAGCAATGGGCAAAATTATGCTTCTTTTGGGTACCCTCATTGGAATATTATGCTGTTTCACAATCACTTCCTATGCCTTCTCACCTTCTGGATGGACTAGTGCCCATGCCACTTTCTATGGGGGTAGTGATGCTTCAGGAACTATGGGTAAGGGGAGCTTGTGGGTATGGGAATCTGTATTCAACTGGGTATGGAACTAGAACTGCAGCTTTAAGTACAGCCTTATTCAACGATGGAGCTTCCTGTGGTCAGTGCTTCAAAATAATATGTGATTACAAAACAGACTCTAGATGGTGCATCAAAGGAAGATCTGTAACCATAACCGCCACAAACTTCTGCCCTCCCAATTTCGCTCTTCCTAACAATAACGGTGGATGGTGCAACCCTCCACTCAAGCATTTCGATATGGCCCAACCCGCCTGGGAAAAGATTGGCATCTACAGAGGAGGCATCGTGCCCGTGCTATTCCAAAGGGTTCCATGCAAAAAGCATGGAGGGGTAAGGTTCAGTGTGAATGGGAGGGACTACTTTGAGCTAGTGCTGATAAGCAATGTGGGTGGTGCTGGATCAATCCAATCAGTGTCGATTAAAGGGTCGAAAAGTGGATCGGGATGGATGGCTATGTCGAGAAATTGGGGTTCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCATTGTCCTTCAGGGTCACAACCTCTGACGGAGAAACCAGAGACTTCCAAGACATTGTTCCATCGAGTTGGACATTCGGCCAAACTTTCTCTAGCCCAATTCAGTTCTCATAA 903 0.4474 MCPRSLLPYLNTYLMYLEMTIIANTNSNSSLIIRHSASKQWAKLCFFWVPSLEYYAVSQSLPMPSHLLDGLVPMPLSMGVVMLQELWVRGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDSRWCIKGRSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNVGGAGSIQSVSIKGSKSGSGWMAMSRNWGSNWQSNAYLNGQSLSFRVTTSDGETRDFQDIVPSSWTFGQTFSSPIQFS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0027 300 Pfam Lytic transglycolase 106 193 IPR009009 -
Aed11g0027 300 Pfam Expansin C-terminal domain 205 284 IPR007117 -
Aed11g0027 300 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 89 204 IPR007112 -
Aed11g0027 300 Gene3D - 204 300 IPR036749 -
Aed11g0027 300 PRINTS Expansin signature 162 179 IPR002963 GO:0009664
Aed11g0027 300 PRINTS Expansin signature 143 153 IPR002963 GO:0009664
Aed11g0027 300 PRINTS Expansin signature 179 192 IPR002963 GO:0009664
Aed11g0027 300 PRINTS Expansin signature 130 141 IPR002963 GO:0009664
Aed11g0027 300 PRINTS Expansin signature 203 215 IPR002963 GO:0009664
Aed11g0027 300 PRINTS Expansin signature 252 273 IPR002963 GO:0009664
Aed11g0027 300 PRINTS Expansin signature 101 115 IPR002963 GO:0009664
Aed11g0027 300 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Aed11g0027 300 PRINTS Expansin signature 281 297 IPR002963 GO:0009664
Aed11g0027 300 Gene3D - 73 200 IPR036908 -
Aed11g0027 300 SUPERFAMILY PHL pollen allergen 201 295 IPR036749 -
Aed11g0027 300 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 214 295 IPR007117 -
Aed11g0027 300 SUPERFAMILY Barwin-like endoglucanases 88 222 IPR036908 -
Aed11g0027 300 PANTHER EXPANSIN-A15 89 299 IPR002963 GO:0009664
Aed11g0027 300 SMART dpbb_1 106 194 IPR007112 -
Aed11g0027 300 PRINTS Expansin/Lol pI family signature 281 295 IPR007118 GO:0005576
Aed11g0027 300 PRINTS Expansin/Lol pI family signature 187 203 IPR007118 GO:0005576
Aed11g0027 300 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Aed11g0027 300 PRINTS Expansin/Lol pI family signature 110 128 IPR007118 GO:0005576
Aed11g0027 300 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Aed11g0027 300 PANTHER EXPANSIN 89 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0027 Aed-Chr11 181833 183283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0027 106 299 Expansin Gene Family AT1G20190 79.897 2.46e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0027 - - gmx:548040 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0027 11 181833 183283 Aed11g0027 11 181833 183283 ECH
Aed11g0027 11 181833 183283 Aed9g0200 9 1420152 1421668 PCT