Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0005 ATGGAGAAGACGGGAGTATTATCGGCGAAGGAGGCATTCGAGAAGCTTGAAAAGGTTGGAGAAGGGACATACGGGAAGGTGTACAGAGCAAGAGAGAAAGCCACTGGGAAGATCGTCGCTCTGAAGAAGACTCGTCTCCACGAGGACGAAGAAGGTGTCCCTCCCACCACTCTCCGCGAGGTTTCCATTCTGCGAATGCTCTCTCGCGATCCTCATGTCGTCAGGTTGATGGATGTCAAACAAGGTCAGAACAAGGAAGGGAAGACAGTGCTCTACTTGGTATTTGAGTACATGGATACCGATCTCAAGAAATTCATTCGCTCTTTCCGCCAAACCGGAGAAACCATTCCACCCCAAACCATTAAAAGCTTGATGTACCAGCTTTGCAAGGGCGTTGCTTTCTGCCACGGTCATGGGATATTACACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAAAAACAATGATGCTTAAAATTGCTGATCTCGGACTCGCTCGAGCATTTACTGTGCCAATTAAGAAATATACACACGAGATACTAACCCTGTGGTATAGAGCTCCTGAAGTCCTCTTGGGTGCTACCCATTACTCTATGGCGGTGGACATATGGTCGGTTGCCTGCATATTTGCCGAACTTGTCACTAAACAAGCACTCTTTGCTGGTGATTCCGAGCTGCAACAACTCCTGCATATATTCAGGCTATTGGGAACTCCTAATGAAGAGGTGTGGCCTGGCGTGAGTAAACTAATGAACTGGCATGAATATCCTCAATGGAACCCCCAAAGTCTGTCAAAAGCTGTTCCAAGTTTGGATGAGCTTGGACTGGATTTGCTATCTCAAATGTTGAATTACGAACCTTCCAAGCGGATTTCTGCAAAGAAAGCAATGGAACATGCATACTTCGATGACCTAGACAAGAGGCACCTTTAG 936 0.4701 MEKTGVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGETIPPQTIKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDIWSVACIFAELVTKQALFAGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWNPQSLSKAVPSLDELGLDLLSQMLNYEPSKRISAKKAMEHAYFDDLDKRHL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0005 311 SMART serkin_6 13 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g0005 311 Gene3D Transferase(Phosphotransferase) domain 1 101 310 - -
Aed11g0005 311 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Aed11g0005 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Aed11g0005 311 Pfam Protein kinase domain 13 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g0005 311 Gene3D Phosphorylase Kinase; domain 1 8 99 - -
Aed11g0005 311 PANTHER CELL DIVISION PROTEIN KINASE 7 309 - -
Aed11g0005 311 PANTHER - 7 309 - -
Aed11g0005 311 SUPERFAMILY Protein kinase-like (PK-like) 11 306 IPR011009 -
Aed11g0005 311 ProSiteProfiles Protein kinase domain profile. 13 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0005 Aed-Chr11 38137 40163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0005 1 311 Core Cell Cycle Gene Families AT1G20930 85.397 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Aed11g0005 Pkinase 2.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0005 K07760 - gmx:100808302 612.068