LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed11g0002	ATGGTTTCGATTCATCCACACGCACACACACTAGTGTGTCCTTTCTCAGTTTCCTCTTCATCCTCCCGTTTTCTCAGATGCCGCATCCGCTCTCCGAAACGACGAAGCAACTTAATTACTGCTTCGTGGCAAGAGCTGGCGGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCCGTGAAAGGTATAGCTAGTAGTCCGCTAGGGGAGTCGCTTCAGAGGAGAATGGAGGAGAGAAAGAATTTTGCTGTAGAAAACTCATCTAAATTCAAGGCCTTAGCCGACAAGGCCCGAAAGGAGAGCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGACATTGCTGGGCTTGGCCAGGATTCTGTGGCACTACAGAAATACTTCAACTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCTGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTCGTAGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAACTCAAGGGAGATACTCTAGATTACCTTGGCATTCAGGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCGGAATATGCTAGATACTGTGGGATTGAGGCATTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCCTGAAGCTTTTGAAGAGCTTAAGGTAAAAGAAATAAAAAATGGACGCTTGGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAAGCAGCACTGACGGGCAAAGGTCCTGTACAGAACCTTATTGATCACATCTCCGATCCTTTCCACAACAACTTGCTGGGCTCCCTCATGTAA	972	0.4671	MVSIHPHAHTLVCPFSVSSSSSRFLRCRIRSPKRRSNLITASWQELAGVLLFSAIPFTAVKGIASSPLGESLQRRMEERKNFAVENSSKFKALADKARKESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDSVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNNLLGSLM	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed11g0002	323	Gene3D	Chlorophyll a/b binding protein domain	110	321	-	-
	Aed11g0002	323	Pfam	Chlorophyll A-B binding protein	120	295	IPR022796	-
	Aed11g0002	323	PANTHER	CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC	37	318	-	-
	Aed11g0002	323	SUPERFAMILY	Chlorophyll a-b binding protein	102	320	-	-
	Aed11g0002	323	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	37	318	IPR001344	GO:0009765\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed11g0002	Aed-Chr11	12950	16575	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed11g0002	26	322	Chloroplast and Mitochondria Gene Families	AT1G76570	77.778	2.62e-175	487

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed11g0002	K14172		-	gmx:100786260	607.446