Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2154 ATGATGGGTAGAAGCCGAGAAAAACCTTCAAATATGGAAATTGATCTATCTTTGAAGATAGATAGTAGTGATGATGATGAGCAAAAAGAAGAAGTAGATGAGCGAGTGAAAGAGAATAACGAGGAAGAAATGGCACAAATTCCGGATAATAATAATAAGGAAGAAGTCCCTGAAGCCACAGCTGGTGAAATAGAAGATGATGCTTCAGTGGTAGAAACTTCTTTGCAAGATAACACAAAAACAAAAGAGTTAAGTGTCTTACAAATCGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTCGTAGAGCAAACAATGAAAGACTATTATGATCTGCAAATGAAATTCTCAGCAATCCAGGAAAACAATAAAAGAAAGGATCATGAAATTTCTCTCTCACTTCAGGACATTGCTACAACCAGCGGTGAAGGAGGACCATCGAGAAATATTCTTGAAATCTTTAACAAAAAAAATCAAAGTTCTCCAATATCTCCTCCTCCACACACTACTACTGATGATGATGATGGTTTAAGCGAGAGTGAATTGGGTTTATCACTAAGGTTGCAACCAAGCACAAGCCATAAAGAAAGTGATCATGTGGGAAATAATAAGGAAGCAGACAGAAATAATGATCAAGTACAATTGGCAAGTTTTGCATCAGTGCATCAGAATAAATTACATCGGACACATGATTTACCCGGTGTTACTACTCATGCTGCTTCCCCTCCTAATAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAAGCTGCCACGATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAAGGAAATCCATGCCCACGAGCCTATTATCGTTGCACTGTAGCCCCAGGTTGTCCTGTTAGGAAACAGGTGCAAAGATGTATAGATGACATGTCCATACTAATTACAACCTATGAAGGAACACATAACCATCCACTCCCAGTTGGTGCAACTGCTATGGCTTCCACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGACTCAAGCAACCCTATTTCTGATGGCACCTCCACTTTCACTCAAGCACCTCTTCCATACAACACCTTCCACCCATATAACCAAGTTTCAAATTTTAGGAGCATAAGCCCTAGTGATCCATCCAAAGGGATTATTCTTGATCTCACTAGCAACCTTAGTGAAGCACCACTGCGTTTTAATTCCACTGGCAGCTCCTCTAATACCACAATTGATCCTCGTTTTTCTTGGATGCAAAACAAATACCAAGGTGGTGGTGGTGCCATTGCATTGAACAACAACTTTCATCATCACAAGCCTAGGCCAGTGGATAATTTTCTTCATGATAGAATTTGGAAAGGAGATCAAGAAAGCAATGTTAATAATAATAATGATCACAATGTGTCCGCAATTGCCTCAGATCCTAAGTTTAGGACTGCTGTTGCTGCGGCCATAACATCTCTCATGAATAAAGAAAGCCACGCTACTCATCCTATAGGCACTACTTCCTTTGGTCCTAGGAGTGGCCAAAATGGCAGCTAG 1548 0.4063 MMGRSREKPSNMEIDLSLKIDSSDDDEQKEEVDERVKENNEEEMAQIPDNNNKEEVPEATAGEIEDDASVVETSLQDNTKTKELSVLQIEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRKDHEISLSLQDIATTSGEGGPSRNILEIFNKKNQSSPISPPPHTTTDDDDGLSESELGLSLRLQPSTSHKESDHVGNNKEADRNNDQVQLASFASVHQNKLHRTHDLPGVTTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDGTSTFTQAPLPYNTFHPYNQVSNFRSISPSDPSKGIILDLTSNLSEAPLRFNSTGSSSNTTIDPRFSWMQNKYQGGGGAIALNNNFHHHKPRPVDNFLHDRIWKGDQESNVNNNNDHNVSAIASDPKFRTAVAAAITSLMNKESHATHPIGTTSFGPRSGQNGS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2154 515 Coils Coil 84 111 - -
Aed10g2154 515 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed10g2154 515 MobiDBLite consensus disorder prediction 494 515 - -
Aed10g2154 515 Gene3D WRKY domain 248 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed10g2154 515 Pfam WRKY DNA -binding domain 264 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed10g2154 515 SUPERFAMILY WRKY DNA-binding domain 256 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed10g2154 515 MobiDBLite consensus disorder prediction 195 209 - -
Aed10g2154 515 MobiDBLite consensus disorder prediction 160 209 - -
Aed10g2154 515 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 13 499 - -
Aed10g2154 515 MobiDBLite consensus disorder prediction 1 68 - -
Aed10g2154 515 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed10g2154 515 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 499 IPR044810 GO:0003700
Aed10g2154 515 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2154 Aed-Chr10 25042338 25044987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2154 87 386 WRKY Transcription Factor Family AT1G68150 49.346 6.28e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed10g2154 WRKY 1.8e-24 CL0274