Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2131 ATGTCTGACGTGGAAGAGTATCGTTGCTTCATTGGTGGCCTTGCATGGTCAACGTCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTATTGAGGCCAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACTTTTGATGACAAGAAAGCAATGGATGAGGCTATTGATGCTATGAATGGGATGGATTTAGACGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCGGGAGCGTGGTCCAGTGGTGGTGGTTATGGTCCGGATAGAAATGCAGATCGTTCTTCAGGGGGGCGCAGCAGGGATGGTGGTAGTCATGGAGATTCTGGAGGCTTTGAAATTGAAGAGGTTGCTGTTAATGCTTCAACTTTCCTTTTCATTTGCACTTGACAATGCTCTGGACATCTGGGATTGTTGTTTGGATGGATCATTGATACCAGTATTTTGA 510 0.449 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGPVVVVMVRIEMQIVLQGGAAGMVVVMEILEALKLKRLLLMLQLSFSFALDNALDIWDCCLDGSLIPVF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2131 169 PANTHER TRANSFORMER-2-RELATED 1 101 - -
Aed10g2131 169 SUPERFAMILY RNA-binding domain, RBD 4 98 IPR035979 GO:0003676
Aed10g2131 169 Gene3D - 2 104 IPR012677 -
Aed10g2131 169 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 101 - -
Aed10g2131 169 SMART rrm1_1 8 81 IPR000504 GO:0003723
Aed10g2131 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Aed10g2131 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2131 Aed-Chr10 24910824 24914474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2131 3 65 C2H2 Transcription Factor Family AT2G19380 39.683 4.45e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2131 - - gmx:100815224 204.912