Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2126 ATGGTGAACGTTCCGAAGACGAAGAAGACCTACTGCAAGAGCAAGGAGTGCAAGAAACACACGCTCCACAAGGTCACGCAGTACAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGTAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACCAAGCCCGTCTTCCACAAAAAGGCGAAAACCACCAAGAAGATTGTGTTGAGGCTCCAGTGCCAGGGCTGCAAGCATGTCTCGCAGCACCCTATCAAGAGGTGCAAGCATTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACCTCTCTCTTCTAG 318 0.5283 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2126 105 Gene3D - 1 105 - -
Aed10g2126 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Aed10g2126 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Aed10g2126 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Aed10g2126 105 MobiDBLite consensus disorder prediction 28 56 - -
Aed10g2126 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Aed10g2126 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
Aed10g2126 105 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2126 Aed-Chr10 24884321 24885376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2126 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 93.333 2.10e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2126 K02929 - fve:101307377 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2126 10 24884321 24885376 Aed4g2069 4 23862552 23871490 PCT