Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2102 ATGTCTCACTTCGGACGTTCAGGACCTCCTGACATTGCCGACACTTACTCTCTTCTCGTTCTCAACATCACCTTCCGTACCACCGCCGACGACCTATTCCCTCTCTTTGACAAGTATGGCAAGGTCGTTGACATCTTCATCCCCAAGGATCGAAGGACCGGTGAGTCGAGGGGTTTTGCGTTTGTGCGTTACAAGTATGCTGACGAGGCTCAAAAGGCCGTTGAGAGGCTCGACGGGAGAATGGTTGATGGTCGTGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATAATTGAAACAGCTGAGAGATCATCATCAAGGCACCGGTCACGGAGCCGTAGCCCCAAGAAAAGGTATCGTGATGATTACAAAGACCGAGATTCTAGGAGGAGAAGTCGCAGCAGAAGTAATGATAAGTATGAGCGTGACAGGCACCGTGGGAGAGACAAAGATTATCGCCGCAGAAGCAGGAGCCGTACCGCTCCCCTGCACGACGCAGTCCTAGTCCTCAAAGGAGTCCTTCACCCCAGAGGAGCACTTCCCCTCAACGGAGTACTTCCCCAAAGAAAAGTCCACGGGGTGAAAGTCCTGTCAATCGTAGCCGTGATGGACGTTCTCCTACCCCCCGCAGTGTCTCACCACGCGGTCGCCCTGATGCTTCGCGAAGCCCTTCCCCTCGAAATTCAAATGGGGATGAATAAGCATGTTTTTCATGAAAAATTCTGGAGACGCCAGCCTATTGCACCTGTAGCTGTTTTGCTATTGTTGGAACTTTTAGTCTATGTGAATGATCTTATCAGAGTCATTGAAGGATTTTATGATCTAAGTGCTGTTTGGTAG 867 0.5006 MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAERSSSRHRSRSRSPKKRYRDDYKDRDSRRRSRSRSNDKYERDRHRGRDKDYRRRSRSRTAPLHDAVLVLKGVLHPRGALPLNGVLPQRKVHGVKVLSIVAVMDVLLPPAVSHHAVALMLREALPLEIQMGMNKHVFHEKFWRRQPIAPVAVLLLLELLVYVNDLIRVIEGFYDLSAVW 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2102 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Aed10g2102 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Aed10g2102 288 MobiDBLite consensus disorder prediction 102 117 - -
Aed10g2102 288 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35-LIKE 1 170 - -
Aed10g2102 288 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Aed10g2102 288 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 170 - -
Aed10g2102 288 MobiDBLite consensus disorder prediction 125 168 - -
Aed10g2102 288 SMART rrm2_1 17 90 IPR003954 GO:0003676
Aed10g2102 288 Gene3D - 5 103 IPR012677 -
Aed10g2102 288 MobiDBLite consensus disorder prediction 102 168 - -
Aed10g2102 288 SMART rrm1_1 17 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2102 Aed-Chr10 24725908 24731229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2102 36 89 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 4.06e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2102 K12891 - gmx:100778928 245.743