Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2097 ATGTCGGAGCAAGCGTCTTACGGATTAGGACCTCGATTAGATCTTCAGCAATTACAACTTGAAGCCCAGCATAGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGCAATTATCGGATTTTTCAAATCACATCAGAACCACCTACCAGGCCACCAAGTGGTTCCCTTTTTCTATTTGATCGGAAGGTTTTAAGGTACTTCAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGGAAGACTGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGGAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAAACCAATATTGGTGGGAAAACATATTCTGGCGAGGTTACATCAGATTCCCAGAAGAGCAGTTCCCTGTCATCTGCCTTTCCCAGAAATTATGGTAGCATGCCTTCAGGAAGTACAGATTCCATGAGCCCAACGAGTACTTTGACATCTTTATGTGAAGATGCTGATTCAGAGGATATTCATCAAGCAAGTTCAGGGTTACACTCCTATCGTGAATCACAAAATTTGGGGAATGATTGTCTGATGGATAAGATTGATGCTCGTTCAAATAGTTCATATCTTATGCATCCAATTTCAGGTGATCGCGGACATTTGCCAGTTACTGGGGCAGAATATATCCCACATGTTCAGGAGGATAAGTCTAGAGCTAGTGATACCACTTACATTGAGAGCCAGAGAGCACATGGCATTGCATCCTGGGACAATCCCATGGAACAGTCTGGAGGAAAGCATACTGATCCTTCTCTTGTATCATCTACATCCATTCCATTAAGTGCAATGGGAAACATCCATGAAGAAAACCATACTGTTCCAGGCAACCTTTTAGGGCAGATTCCTTTTGAAGACAATACAGGAGAATTGCCTAATTGGGGCCTTACCCAATCATTGGGTTTGGAATTTGGATCTGATTATGGTACTAGTTTACTGGGGGATGTAACTAATAATGCAGGCCGAGACATTGTTCCCGAGCTGTTCACTTTTAATGGTGAGTTAAAAGAGCAGTCTGTGCACCAAAACTTCTCAAAGCAGTATATACATACACATGGGCAATCTCAACCTGCACTGAAATCCAATTCCGAGTATGAAGTTCCTGGTGAAGCAAGTATCAATTATGCTTTAACCATGAGGCGTGGATTATTGGATGGAGAGGAGAGCCTGAAGAAGGTTGATAGTTTCTCTAGGTGGATTAGCAAAGAACTTGCTGGCGTGGATGATCTGCATATGCAGTCTTCTCCTGGTATTTCATGGACCACAGACGAATGTGGGGATGTGATAGATGATACCTCATTGAACCTGTCCCTGTCTCAAGACCAGCTCTTTAGCATACACGAATTTTCACCTAAATGGGCTTATACTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTTAAGAGTCAACCTGTGGTGGCAAAATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGTTTTATCTGATGGTATTCTGTGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAGTACAGAGAGGGATTTGATAGAAATATAAATGTTACAGATTTTTTCAACAATTCAACTGAAATGGATCATCATTTGCGACTGGTTGAGTTACTTTCTTTAAACTCAGCACACACTTTAAATCAAGTGTTTGAAGGTGATATGGATAAAAGAAACTTAATATTCAAGCTAATTTCACTAAAAGAGGAAGAGGAATATTCAAGTAAGGAAGAGACAACTGCAGAGGTGGATATATCAAAACACAAGTTGAAGGAGCATATGTTTCACAAGCAGGTTAAAGAGAAGTTGTACTCATGGCTTCTTCACAAAGTTACTGAAACTGGTAAAGGGCCTCTTGTATTAGATGAAGAGGGGCAAGGCGTGTTACACTTAGTTGCTGCTCTTGGTTATGATTCGGCCATAAATCCAATCTTAACTGCTGGAGTCAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATTCTGTGGCCGAGAACGAACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCCGCTGGAGCAGTGACAGATCCATGTCCAGAATTTCCTTTAGGTAGATCACCTGCAGATCTTGCTTCTAGCAAAGGCCACAAAGGAATTTCCGGTTTTCTTGGAGAGTCATCATTAACTAGCCACCTCGAATCACTCACAATGGATGAAAATAAAGATGGCAGGAAAGAAACTTCAGGAATGAAAGTAGTGCAGACAGTTTCAGAGCGAACTGCAACACCTGTGCTTTATGGTGATATACCAGATGCTATCTGCCTTGAGGATTCTCTTAATGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAGCTCAGTATGAAGATGATGAATTTGGATTGTCAGATCAACAAGCTCTTTCTCTCCTAGCTTCTAAGACGTGCAAATCTGGACAAGGAAAGGGTGTAGCCAATGCTGCTGCAGTACAAATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATTATTCGCCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAAACCAATCATTTGGTCTGTGGGAATCCTGGAGAAGGTCATATTGCGCTGGAGACGGAAGGGAAGTGGTTTACGTGGATTTCGACCGGCTGCTGCTGTGAATAAGGTCCCTGAGGCTGAGCAACCAAGTGAACCTCCGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAGAGTGAAGTAAGGTTCCAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAATATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAACGTAGTTGAGGACTTCCGTCATACCAAGGGAAGTAATTTGAATTTGACAAATTCGGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGATAGTTTCTTACCTATAGCATTCGATTGA 3198 0.4218 MSEQASYGLGPRLDLQQLQLEAQHRWLRPAEICEILRNYRIFQITSEPPTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIGGKTYSGEVTSDSQKSSSLSSAFPRNYGSMPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLHSYRESQNLGNDCLMDKIDARSNSSYLMHPISGDRGHLPVTGAEYIPHVQEDKSRASDTTYIESQRAHGIASWDNPMEQSGGKHTDPSLVSSTSIPLSAMGNIHEENHTVPGNLLGQIPFEDNTGELPNWGLTQSLGLEFGSDYGTSLLGDVTNNAGRDIVPELFTFNGELKEQSVHQNFSKQYIHTHGQSQPALKSNSEYEVPGEASINYALTMRRGLLDGEESLKKVDSFSRWISKELAGVDDLHMQSSPGISWTTDECGDVIDDTSLNLSLSQDQLFSIHEFSPKWAYTESEIEVLIVGTFFKSQPVVAKCNWSCMFGEVEVPAEVLSDGILCCQAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNINVTDFFNNSTEMDHHLRLVELLSLNSAHTLNQVFEGDMDKRNLIFKLISLKEEEEYSSKEETTAEVDISKHKLKEHMFHKQVKEKLYSWLLHKVTETGKGPLVLDEEGQGVLHLVAALGYDSAINPILTAGVNINFRDVNGWTALHWAAFCGRERTVAVLVSMGAAAGAVTDPCPEFPLGRSPADLASSKGHKGISGFLGESSLTSHLESLTMDENKDGRKETSGMKVVQTVSERTATPVLYGDIPDAICLEDSLNAVRNATQAADRIHQVFRMQSFQRKQLAQYEDDEFGLSDQQALSLLASKTCKSGQGKGVANAAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPAAAVNKVPEAEQPSEPPKEDDYDFLKEGRKQSEVRFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRHTKGSNLNLTNSEETVDGVEDLIDIDMLLDDDSFLPIAFD 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2097 1065 MobiDBLite consensus disorder prediction 137 178 - -
Aed10g2097 1065 ProSiteProfiles IQ motif profile. 909 933 IPR000048 GO:0005515
Aed10g2097 1065 SMART iq_5 885 907 IPR000048 GO:0005515
Aed10g2097 1065 SMART iq_5 908 930 IPR000048 GO:0005515
Aed10g2097 1065 ProSiteProfiles CG-1 DNA-binding domain profile. 15 132 IPR005559 GO:0003677
Aed10g2097 1065 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1065 - -
Aed10g2097 1065 Gene3D - 886 932 - -
Aed10g2097 1065 Pfam IPT/TIG domain 478 563 IPR002909 -
Aed10g2097 1065 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1065 - -
Aed10g2097 1065 SUPERFAMILY E set domains 478 564 IPR014756 -
Aed10g2097 1065 Pfam CG-1 domain 21 125 IPR005559 GO:0003677
Aed10g2097 1065 ProSiteProfiles Ankyrin repeat region circular profile. 711 736 - -
Aed10g2097 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 887 936 IPR027417 -
Aed10g2097 1065 ProSiteProfiles Ankyrin repeat profile. 711 743 IPR002110 GO:0005515
Aed10g2097 1065 ProSiteProfiles IQ motif profile. 886 915 IPR000048 GO:0005515
Aed10g2097 1065 MobiDBLite consensus disorder prediction 268 287 - -
Aed10g2097 1065 Gene3D - 642 771 IPR036770 -
Aed10g2097 1065 SUPERFAMILY Ankyrin repeat 669 770 IPR036770 -
Aed10g2097 1065 SMART CG_1_2 18 127 IPR005559 GO:0003677
Aed10g2097 1065 SMART ANK_2a 678 707 IPR002110 GO:0005515
Aed10g2097 1065 SMART ANK_2a 711 740 IPR002110 GO:0005515
Aed10g2097 1065 Pfam IQ calmodulin-binding motif 888 906 IPR000048 GO:0005515
Aed10g2097 1065 Pfam IQ calmodulin-binding motif 911 930 IPR000048 GO:0005515
Aed10g2097 1065 ProSiteProfiles Ankyrin repeat profile. 678 710 IPR002110 GO:0005515
Aed10g2097 1065 CDD IPT 477 565 - -
Aed10g2097 1065 Gene3D Immunoglobulins 471 566 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2097 Aed-Chr10 24688154 24696489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2097 1 1046 CAMTA Transcription Factor Family AT5G64220 52.495 0.0 1042
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Aed10g2097 CG-1 6.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2097 K21596 - gmx:100795682 1898.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2097 10 24688154 24696489 Aed4g2042 4 23697815 23710795 PCT