Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2087 ATGAATTTCCTTCTTCATCAACAAACTCGATGTAATGGTGCCACTAACTATGAATCCCCCAATGACAGTCCAATGATTAATATGCAGTCCAACATGGAGTATGTTGCCACAATAGAGGAAGAAGCCATCATTAAGAAGTCCAAAGAAAGAAACACAAATAATAAGGATTTGGAGGGTATCTTCCTAACATGGGAGGATTTGAAGGTCACTGTTCCAAATGGAAGGAATGGAAGGAAATCAATTCTTGAGGGTCTAACTGGTTATGCCAAGCCAGGGAAGCTCTTGGCAATAATGGGTCCTTCTGGCTGTGGAAAATCCACACTTCTTGATGCTTTAGCAGGAAGACTGGCTTCAAGCACAAAGCAAACAGGGAAAATTTTAATCAATGGCCACAAACATGCACTGGCTTATGGAACATCTGCATATGTAACACATGATGATGCTGTGTTATCAACATTAACAGTTGGAGAAGCAATGTACTATTCAGCTCATCTCCAATTTCCAGACTCAATGTCCGACAAAGACAAGAAAGAGAGAGCAGACTTTACAATCAGACAAATGGGACTGCAAGATGCCACTGACACAAGGATTGAAGGAAAGGGTTCTAAAGGCATTAGTGCGGGGCAAAAGAGGAGATTAGCCATTTGCATTGAGATTCTCACAAGCCCTAAACTTCTCCTTCTTGATGAACCAACTAGTGGCCTTGACAGTGCAGCTTCCTACTATGTCATGAGCAGAATTGCAAGTCTGAAGATCAGAGATGGCATCAAAAGGACAATTGTTGCATCCATTCATCAGCCTAGTAGTGAGGATGATGAAGAATGCTTTCACATAACAGTACACAAAGAAGCAGCAGTTGATATCCTTGTGAAGTTCTATAAATCTTCTGAAATTAGTGTCCAAGTTCAGAAAGAAGTAGCAGCAATAGCAATTAGTCTTGGCACTATATTCTTTGACGTTGGTTCAGCTGGTCGTGCATCAATCCAGGCTAGAGGGGCACTGGTCTCTTTTGTTGCTTCAGTCCTAACTTTCATAACTCTTCTTGGTGGATACCCGCCATTTGTGGAACAAATGAAGAGCCTCATGTTGATGGTTTCAAGTGTCTTCCCCGATCCCAGCACAGGCATCACAGTCTCAGGTGGATTCGTGGGAATCATGATTTTAACCGGCGGATTCTTTCGCCTGCCGAATGATCTTCCCAAACCATTTTGGAAGTACCCTATGTACTATGTTTCTTTCCACAAATATGCCTTCCAAGGATTGTTCAAGAATGAGTTTATTGGTCTGAAATTGGCTAGTGATCAAGATGGTGGTGCCTACATGAGTGGTGAGGAAATACTTACAAAGATATGGCAAGTGGAAATGGGTCACTCAAAGTGGGTTGATTTTGCTATCTTGCTGGGAATAATTGTTTTGTATAGGCTTGTGTTCTTGGGAATCATTAAGATCAAGGAGAAGATCAAGGCTTGA 1470 0.4184 MNFLLHQQTRCNGATNYESPNDSPMINMQSNMEYVATIEEEAIIKKSKERNTNNKDLEGIFLTWEDLKVTVPNGRNGRKSILEGLTGYAKPGKLLAIMGPSGCGKSTLLDALAGRLASSTKQTGKILINGHKHALAYGTSAYVTHDDAVLSTLTVGEAMYYSAHLQFPDSMSDKDKKERADFTIRQMGLQDATDTRIEGKGSKGISAGQKRRLAICIEILTSPKLLLLDEPTSGLDSAASYYVMSRIASLKIRDGIKRTIVASIHQPSSEDDEECFHITVHKEAAVDILVKFYKSSEISVQVQKEVAAIAISLGTIFFDVGSAGRASIQARGALVSFVASVLTFITLLGGYPPFVEQMKSLMLMVSSVFPDPSTGITVSGGFVGIMILTGGFFRLPNDLPKPFWKYPMYYVSFHKYAFQGLFKNEFIGLKLASDQDGGAYMSGEEILTKIWQVEMGHSKWVDFAILLGIIVLYRLVFLGIIKIKEKIKA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2087 489 Gene3D - 61 299 IPR027417 -
Aed10g2087 489 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 3 270 - -
Aed10g2087 489 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 309 360 - -
Aed10g2087 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 268 IPR027417 -
Aed10g2087 489 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 359 489 - -
Aed10g2087 489 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 308 IPR003439 GO:0005524
Aed10g2087 489 Pfam ABC-2 type transporter 360 426 IPR013525 GO:0016020|GO:0140359
Aed10g2087 489 Pfam ABC transporter 84 233 IPR003439 GO:0005524
Aed10g2087 489 SMART AAA_5 91 296 IPR003593 -
Aed10g2087 489 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 271 309 - -
Aed10g2087 489 ProSitePatterns ABC transporters family signature. 205 219 IPR017871 GO:0005524
Aed10g2087 489 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 3 270 - -
Aed10g2087 489 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 309 360 - -
Aed10g2087 489 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 359 489 - -
Aed10g2087 489 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 271 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2087 Aed-Chr10 24621338 24625641 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2087 81 269 Calmodulin-binding Proteins AT2G36910 30.348 4.25e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2087 K05681 - gmx:100784793 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2087 10 24621338 24625641 Aed10g2087 10 24621338 24625641 ECH