Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2080 ATGACTACCTATCTTTCTCCACAACATGAGGCTTTGCAAACTAATGCACAAGTTTTAACCACAATATTTGAAGGTGGTGATGCCATTAAGTTAACAGAAATCAGTGGAAGTGTTAAGGTAGAGAACAAGGACATAACAGTGACATGGGAGAATTTGTGGGTTTCTGTTTCAAGTGGAAAGACAAAGAAGCCAATTCTGCAGGATCTTGCAGGCTATGCCCGGCCAGGAAGGATTCTGGCCATAATGGGGCCTTCAGGATGTGGAAAATCTACACTTCTTGATTCTTTAGCAGGAAGATTGAGCACAAACATGAAGCATGCAGGGAAGATTCTAATCAATGGCCAGAAACAAGCACTGGCATATGGCACATCAGGCTATGTAACACAAGATGATGCTATGCTGTCAACTTTAACCACTGGTGAAACTTTGTACTACTCAGCTCAGCTCCAATTTCCAGATTCCATGTCCATAGCAGAGAAGAAGGAAAGAGCAGATATGACACTGAGAGAAATGGATGGCTTTGGAAAGGGAGTAACTACAGAAAAAGCAATTGATACCCTTGTAAAGTCTTACAGGACGTCTCAAATTAGAAAACAAGTTAAAAAGGAAGTGGATAAAATAGGTGAAAGTGATGCTGGTGCAATAAGGAAGCAGAGGATCCATGCTGCATTTACCACCCAATGCCTTGTTCTCATAAGAAGATCTTCGCTGCAATTGTTTCGTGACATAAGCAATTACTGGTTACGTTTAGTTGTCTTCATTGTAATAGCTTTTAGCATTGGCTCTATCTTCTATGACATAGGCACAAGTAAAGGATCTATTCAGGGGAGAGGTTCGCTGCTCATATTTTTAGTTTCGGTTTTGTCTTTCATGACCCTTGTTGGTGGATTCTCTCCACTTTTGGAGGAAATGAAGGTATTTGAACGAGAGAGATTGAATGGACACTATGGTATCACAGCATTTCTCATAGGTAACATATTTTCTGCTGTTCCTTACATGCTAATGATCTCTCTGATTCCTGGAGGAATAGCATACTACCTCTGTGGAATGCACAAAGGACCAGAACGCTTCTTCTACTTCGCTTCTTTGCTATTTGCCATAGTGATGTGGGTTGAGAGCCTTATGTTGGTTGTTGGGAGCATCTCCCCCAACTATGTAATAGGCATGTTCCTTGCTGGTGGAGTTGAAGGACTCATGATTCTAACTGGTGGATTCTATAGACTTCCAAATGATCTTCCAAAACCACTATGGAAGTACCCTTTTTACTATGTTTCTTTTCTCAAGTATGCCTTCCAAGGATCAATCAAGAATGATTTTGATGGCTTGACATTTTCCATAGACGGAGGCACCATGAGTGGTAGAGAAGTACTAGCTGAAACATGGCATGTGGAAATTAGTTACTCTAAATGGGTTGATCTTGGTATCATGTTTGGAATGATTGTTCTGTATCGAGTTCTGTTCTTGGTCATCACTAAGTTCAAGGAGAAGCTGAAGCCTTTTGTTGCATCCATTAGTGGTTATGCTCTGCCAGGGAAGCTTTTGGCTATAATGGGTCCTTCAGGCTGTGGCAAATCCACACTTCTTGATGCTTTAGCAGGACGATTGACATCAAACATAAATCAAACGGGGAAGATTCTAATAAATGGCCACAAACAAGAACTGGCATATGGAACATCAGGCTATGTAACACAAGATGATGCTATGCTGTCATGTTTAACCGCTAGAGAAACTTTATACTACTCAGCTCAGCTCCAATTTCCAAACACCATGTCTGTAGAGGAGAAGAAGGAAAGAGCAGATATGACACTGAGAGAAATGGGTCTGCAAGATGCTATCAACACAAGGGTTGGAGGGTGGAGTTCTAAAGGCCTCAGTGGGGGACAAAAGAGGAGACTCAGCATTTGCACTGAGATTCTAACACACCCTAAACTCCTTTTCCTTGATGAACCAACTAGTGGACTTGACAGTGCAGCTTCCTATTATGTTATGAGTGGAATTGCAAGCCTAATTCAAAGGGATGGAATTCAAAGGACTATTGTTGCTTCCATCCATCAACCTAGCAGTGAAGTTTTCCAACTTTTCCATGATCTTTGTCTTCTGTCTTCAGGAGAGACAGTATATTTTGGTCCTGCATCTGATGCAAATCAGTGCAGTTTTTTGCTTCAAATGGTTTTCCTTGCCCACCTCTACAATCCTTCTGATCATTACTTAAGGATCATCAACAAAGATTTCAATCAGGAAGCCGACGAAGGAATAACTACTGAAGAAGCAACTGATATCCTTGTCAGATCTTATAAATCGTCTGAAATTAGAAATCACGTTCAGAATGAAATCGAGAAAATAAGTGAATACGTAGCTTTTCTAATAGGCAACATATTCTCTGCTGTTCCATACATACTATTGATATCAACGATTCCCACAGCAATAGTTACCTATCTCTCTGGATTACACAAAGGACTAGAAAACTTTGTATACTTTGCTTCTGTCCTATTTGCAATAGTGATGTGGGTTCAGAGCCTCATGATGGTTGTTGGGAGCATCTTCCCAAACTTTGTCATGGGAGTGATAACTGCTGGTGGAGTTGAAGGACTCATGATTTTAACAAGTGGTTTCTATAGAAACCCAAATAAGCTTCCAAAACCACTGTGGAAATACCCTTTCTACTATGTTTCCTTCCTCACCTATGCTTTGCAAGGATTGTTGAAGAATGCGTTTGAAGGGTTGACATTATTTTCTTCTTCTTATCATCATCAAGGTGGTGCCAAAACTAGTGTTGATGGTAGAGATGTACTTACTCAGACATGGCATGTGCAAATGGGTCACTCTAAGTGGTTTGATCTTGCTATCATGTTTGGCATGATTGTTGTGTATCGAGTTATGTTCTTGGCCATAACCAATCCCGGATTTGCTTGCCACTGTGCTGAAGAGATGTCGAAACCAGGTAACAACCCCTTACACCAAGTCCAAGCCAAGAATAATACCAAATGA 2988 0.4083 MTTYLSPQHEALQTNAQVLTTIFEGGDAIKLTEISGSVKVENKDITVTWENLWVSVSSGKTKKPILQDLAGYARPGRILAIMGPSGCGKSTLLDSLAGRLSTNMKHAGKILINGQKQALAYGTSGYVTQDDAMLSTLTTGETLYYSAQLQFPDSMSIAEKKERADMTLREMDGFGKGVTTEKAIDTLVKSYRTSQIRKQVKKEVDKIGESDAGAIRKQRIHAAFTTQCLVLIRRSSLQLFRDISNYWLRLVVFIVIAFSIGSIFYDIGTSKGSIQGRGSLLIFLVSVLSFMTLVGGFSPLLEEMKVFERERLNGHYGITAFLIGNIFSAVPYMLMISLIPGGIAYYLCGMHKGPERFFYFASLLFAIVMWVESLMLVVGSISPNYVIGMFLAGGVEGLMILTGGFYRLPNDLPKPLWKYPFYYVSFLKYAFQGSIKNDFDGLTFSIDGGTMSGREVLAETWHVEISYSKWVDLGIMFGMIVLYRVLFLVITKFKEKLKPFVASISGYALPGKLLAIMGPSGCGKSTLLDALAGRLTSNINQTGKILINGHKQELAYGTSGYVTQDDAMLSCLTARETLYYSAQLQFPNTMSVEEKKERADMTLREMGLQDAINTRVGGWSSKGLSGGQKRRLSICTEILTHPKLLFLDEPTSGLDSAASYYVMSGIASLIQRDGIQRTIVASIHQPSSEVFQLFHDLCLLSSGETVYFGPASDANQCSFLLQMVFLAHLYNPSDHYLRIINKDFNQEADEGITTEEATDILVRSYKSSEIRNHVQNEIEKISEYVAFLIGNIFSAVPYILLISTIPTAIVTYLSGLHKGLENFVYFASVLFAIVMWVQSLMMVVGSIFPNFVMGVITAGGVEGLMILTSGFYRNPNKLPKPLWKYPFYYVSFLTYALQGLLKNAFEGLTLFSSSYHHQGGAKTSVDGRDVLTQTWHVQMGHSKWFDLAIMFGMIVVYRVMFLAITNPGFACHCAEEMSKPGNNPLHQVQAKNNTK 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2080 995 Pfam ABC-2 type transporter 785 905 IPR013525 GO:0016020|GO:0140359
Aed10g2080 995 Pfam ABC-2 type transporter 226 437 IPR013525 GO:0016020|GO:0140359
Aed10g2080 995 Pfam ABC transporter 508 652 IPR003439 GO:0005524
Aed10g2080 995 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 172 500 - -
Aed10g2080 995 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 785 966 - -
Aed10g2080 995 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 11 171 - -
Aed10g2080 995 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 785 966 - -
Aed10g2080 995 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 11 171 - -
Aed10g2080 995 Pfam ABC transporter 68 171 IPR003439 GO:0005524
Aed10g2080 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 714 IPR027417 -
Aed10g2080 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 171 IPR027417 -
Aed10g2080 995 SMART AAA_5 75 258 IPR003593 -
Aed10g2080 995 SMART AAA_5 510 699 IPR003593 -
Aed10g2080 995 Gene3D - 47 197 IPR027417 -
Aed10g2080 995 Gene3D - 489 720 IPR027417 -
Aed10g2080 995 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 485 727 IPR003439 GO:0005524
Aed10g2080 995 ProSitePatterns ABC transporters family signature. 624 638 IPR017871 GO:0005524
Aed10g2080 995 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 498 783 - -
Aed10g2080 995 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 172 500 - -
Aed10g2080 995 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 498 783 - -
Aed10g2080 995 Pfam ABC-2 type transporter 684 781 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2080 Aed-Chr10 24552275 24562585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2080 463 688 Calmodulin-binding Proteins AT2G36910 28.151 4.00e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2080 K05681 - gmx:100794527 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2080 10 24552275 24562585 Aed10g2080 10 24552275 24562585 ECH