Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2072 ATGGGGCTGCATCACAGACATTTGTTAGACTCACCATCAGACTGTGTAAAAGCCTGTGCTGAGAAGAAACCACCACCATCCTGTACCCCCTGTGCTCCTCCTCCTCCTCCTCCTCCTTATATTTATGATTCCCCCAAACAACACATCGAAACTAAATACTTGATCATAAGTTTCTCTATTGTAGCAGCAGCTTTCATCGTCCTCTGCCTCTACGCCATCTACGTCAAGTTCTTGTCTCCTCGGAGGAACAGGAACAGGAACAGGTCAATCACAAGAACAACCCTCTCACACCCACAGGCAGAACAAGATTTCTTGGACGAGGAACAAGAACAAGAACAAGAACAGAACGGTCCCGTCGTTGACCACCACATCTGGTACATCCGCACCGCCGGTCTCCAACCGGCGGTGGTCGCGGCCATCACCGTGTGCAAGTACAAGAAAGACGAGGGCTTGATCGAAGGAACAGAGTGTTCCGTTTGCTTGAGCGAGTTTCAGGAGGAGGAGAGTGTCAGGCTGTTGCCCAAGTGCAACCACGCTTTTCACTTGCCCTGCATTGACACGTGGCTCGGATCGCACACCAATTGTCCCATGTGCCGCGCTCCGATTGTCACTGACCCCGCTAGGGTTCCCTCCATGGACCCCACTGCGTTTTCTTCAAGTTCTAATTTTGTGCAGGAGGTTTTGGAAAACAGTGATGAGGAGGAAGAGGAAAGAGCAGTGCAAGAAGTTCAAGTGTGTGAAACTGAAACTGAAACTGAGAATTCGGCTTCAGAAGTGGTGACTTTGCAGCAGCCGAGAAGATCGGTGTCTTTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCAACTGTTGTGTCAGAGGAATCTCATGGGAATCATTCAAAGAGGGTTGTTGCTACTAAAGGTGGTTCTTCTTCTTCTTCTTCAACTAGTTCGGTGAAGAGGTCACGATCATTCAATGCCAAACACTTGTTATCATTGTATGGCTATGGCCGTAAGAAAGCCAAATCCTCCTTTGAGAAGCTTCTGATTCATCATAATTTCTCCGGTTCTGGACAACTAGAGTGTGTGTTTCTAACTCTCAACAAGATAAGCATGCATGAACCGATCGAGTAA 1122 0.4804 MGLHHRHLLDSPSDCVKACAEKKPPPSCTPCAPPPPPPPYIYDSPKQHIETKYLIISFSIVAAAFIVLCLYAIYVKFLSPRRNRNRNRSITRTTLSHPQAEQDFLDEEQEQEQEQNGPVVDHHIWYIRTAGLQPAVVAAITVCKYKKDEGLIEGTECSVCLSEFQEEESVRLLPKCNHAFHLPCIDTWLGSHTNCPMCRAPIVTDPARVPSMDPTAFSSSSNFVQEVLENSDEEEEERAVQEVQVCETETETENSASEVVTLQQPRRSVSLDSSSAAKISLALATVVSEESHGNHSKRVVATKGGSSSSSSTSSVKRSRSFNAKHLLSLYGYGRKKAKSSFEKLLIHHNFSGSGQLECVFLTLNKISMHEPIE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2072 373 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Aed10g2072 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 206 IPR013083 -
Aed10g2072 373 SMART ring_2 157 198 IPR001841 -
Aed10g2072 373 Coils Coil 224 244 - -
Aed10g2072 373 CDD RING-H2_PA-TM-RING 156 199 - -
Aed10g2072 373 Pfam Ring finger domain 156 199 IPR001841 -
Aed10g2072 373 MobiDBLite consensus disorder prediction 292 316 - -
Aed10g2072 373 PANTHER RING-H2 FINGER PROTEIN ATL54 13 340 - -
Aed10g2072 373 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 340 IPR044675 -
Aed10g2072 373 SUPERFAMILY RING/U-box 148 206 - -
Aed10g2072 373 MobiDBLite consensus disorder prediction 300 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2072 Aed-Chr10 24511444 24517317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2072 45 255 C3H Transcription Factor Family AT1G72220 41.475 2.30e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2072 - - gmx:100819010 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2072 10 24511444 24517317 Aed10g2072 10 24511444 24517317 ECH