Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2059 ATGACTAGAAAGAGGATACAGATCAAGAAAATTGACAACATCAGTTCGAGGCAGGTGACTTTCTCAAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGCTATCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGTATGCATCAAGTAATTGAAAGGCGCGATCGCCATTCAGCAATGCATAGACTGGATCGCCCCTCTATTGAGCTGCAGATTGAGAGTGACTCCAATGACATCCTGCGCAAGAAAGTAGAAGATAGGAATCTTGAACTGAGGCAGTTGAATGGGGAAGACCTGCAAGGATTGACATTACAAGAATTGCAGAAACTAGAGGAACATCTTAAAAGAGGTTTGACAAATGTTTCAAAAGTAAAGGATGAAAAAGCTATGCAAGAGATCAGCACCCTTAAGAAAAAGGGAGTGAAACTAATGGAGGAAAACCAAAGGTTGAAACAGGTACCGAGCCTTATCCATGTACATAGGCAATCATCGGAATCCATTATTAGCAATTCATCTAATAATCTTCCTGAAGATGGTGGTAGCGACACATCTCTCAAGTTGGGGTTACCATAA 618 0.4142 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMHQVIERRDRHSAMHRLDRPSIELQIESDSNDILRKKVEDRNLELRQLNGEDLQGLTLQELQKLEEHLKRGLTNVSKVKDEKAMQEISTLKKKGVKLMEENQRLKQVPSLIHVHRQSSESIISNSSNNLPEDGGSDTSLKLGLP 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2059 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 - -
Aed10g2059 205 Pfam K-box region 93 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed10g2059 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed10g2059 205 Coils Coil 122 142 - -
Aed10g2059 205 Coils Coil 92 112 - -
Aed10g2059 205 MobiDBLite consensus disorder prediction 176 195 - -
Aed10g2059 205 MobiDBLite consensus disorder prediction 176 205 - -
Aed10g2059 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed10g2059 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed10g2059 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed10g2059 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed10g2059 205 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed10g2059 205 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Aed10g2059 205 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Aed10g2059 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed10g2059 205 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Aed10g2059 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed10g2059 205 PANTHER - 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2059 Aed-Chr10 24429502 24439158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2059 1 205 MADS-box Gene Family AT2G22540 48.945 2.53e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed10g2059 K-box 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2059 - - gmx:100815814 338.576