Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2048 ATGGATAACAGTCTGAACAATCGGACCAGCGACCACGCCGAAGAGCCGCCACTGGCGCCGCCGCTTCCCATGCAAGTGGATGCTTTCCAACCGTTCCATTACGTCAATGGTTCCGACGAAGGGGAAGAACCTGCTCATGCCCCTGCTCCACTAGCCAGAACCAGCGAACTCACCATTTCCTTCGAAGGCGAGGTCTATGTTTTCCCTGCTGTTACTCCAGACAAGGTGCAGGCTGTGTTATTACTCTTGGGAGCACAGGAGATGCCAATTAGTGCCCCCACCTCTGACTTTTTGTTGCAGCAAAACTGTCAGGACATTAGGGAAATAAATGATCCTTCCCGAAGTTCAAAGCTTTCACGAAGATTTGCATCACTTGTTAGGTTTCGTAAAAAAAGAAAGGAGAGATGTTTTGAGAAGAGAATTCGGTACTCTTGTCGTAAAGAAGTTGCTCAGAGGATGCACCGTAAGAATGGACAGTTTGCATCTTTGAAGGAAGACTACAAATCTCCTGCTGAAAATTGGGATTCAACCAATGGTACTCCTTGCCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTGTGCAATGCTTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAAGCAGAACATTCTTGTGCTAAGCAGGACAAGGAGGGAAGCCCTGAGGAAACTAAGCCTCTGCAGATGGATTCCAGACGGTCACCTGAGAAGACAATTGAGCAGTTTATTATTGGAACTGCTGAATCAGTTACTGACAACTTGTCTATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGATCAGGTATTCCTTTTGCTTTCCTCTGATCAAAACCATGATCAGGATACTCTCGAGGATCTTGCTGATGCTTCTGGGACCGAGTTTGAGATTCCTGCCGGTTTTGATGAGCAGGTTGATATTGATGATTCCAACATGAGGACTTACTGGCTGTGA 1098 0.4636 MDNSLNNRTSDHAEEPPLAPPLPMQVDAFQPFHYVNGSDEGEEPAHAPAPLARTSELTISFEGEVYVFPAVTPDKVQAVLLLLGAQEMPISAPTSDFLLQQNCQDIREINDPSRSSKLSRRFASLVRFRKKRKERCFEKRIRYSCRKEVAQRMHRKNGQFASLKEDYKSPAENWDSTNGTPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIAFEQNELDTSADIKPSTTEAEHSCAKQDKEGSPEETKPLQMDSRRSPEKTIEQFIIGTAESVTDNLSIQVENHALSLHDQVFLLLSSDQNHDQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2048 365 Pfam GATA zinc finger 190 226 IPR000679 GO:0006355|GO:0043565
Aed10g2048 365 PANTHER GATA TRANSCRIPTION FACTOR 28 51 356 IPR045280 GO:0006355
Aed10g2048 365 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Aed10g2048 365 Pfam CCT motif 121 162 IPR010402 GO:0005515
Aed10g2048 365 ProSiteProfiles Tify domain profile. 50 85 IPR010399 -
Aed10g2048 365 MobiDBLite consensus disorder prediction 1 24 - -
Aed10g2048 365 ProSitePatterns GATA-type zinc finger domain. 190 217 IPR000679 GO:0006355|GO:0043565
Aed10g2048 365 CDD ZnF_GATA 189 232 IPR000679 GO:0006355|GO:0043565
Aed10g2048 365 MobiDBLite consensus disorder prediction 255 283 - -
Aed10g2048 365 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 238 - -
Aed10g2048 365 Gene3D - 183 242 IPR013088 GO:0006355|GO:0008270
Aed10g2048 365 ProSiteProfiles GATA-type zinc finger domain profile. 184 241 IPR000679 GO:0006355|GO:0043565
Aed10g2048 365 SMART tify_2 50 85 IPR010399 -
Aed10g2048 365 SMART GATA_3 184 237 IPR000679 GO:0006355|GO:0043565
Aed10g2048 365 MobiDBLite consensus disorder prediction 246 283 - -
Aed10g2048 365 Pfam tify domain 54 84 IPR010399 -
Aed10g2048 365 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 51 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2048 Aed-Chr10 24372487 24378163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2048 56 233 Tify Gene Family AT1G51600 56.989 5.06e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed10g2048 CCT 1.2e-12 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2048 - - gmx:102669848 606.675