Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2032 ATGAAATCTGTTATTGAGCGTTATAACAAGGTCAAAGAGGACCATCATCAGTTAATGAATCCTGCTTCAGAAGTTAAGTTTTGGCAGAGAGAAGTGGCAAGCTTGAGGCAACAAGTGCAGTACATGCAAGAATGCCACAGTATTAAAGATTTAAGAAATCTAGAAAATCGGCTGGAGATGAGTTTAAAGGGTGTTCGCATGAAGAAGGATCAAATTCTGATTGAAGAGATCAAAGAACTACACCAAAAGGTAAATCATGCTCATCATGAAAATGTAGAACTTAATAGAAAGATAAACCTCATCCGCAAGGAAAATGAAGAACTACAAAAGGTTACTGAAACGAAGAAGCGTAGAAAAGAAGGTGTTGTTGCAACACCCAATCCTCCATTCACTATCAGCTATGGATATGACACACTTGCTCCTATCAAAGTTGGAGTGCTTGTGTTTTCCTGCACAGGGAAGCTTTATGAATATTCAAGCACCAGCATGAAATCAATCATTGATCGCTTCAACAAGCAAAACGAGGATCATCATCATCGACTAATGGATCCTACTTCAGCACTTAAGGTAACACATGCATGCATGCAACTGATGGGTGAAGAACTTTCTGGTTTGGGTACTAATCAGCTAAAGCATCTGGAAAATCAACTGCAAATGAGTTTGAACAATGTTCGTATCAAAAAGGCAAGCTTTGCTCATAGTCAAAATGAAGAACTTCATAAAAAGATAGACCTTATCCATAAAGAAAATGCAGAACAACAGAAGGTAAGTGATCAATATCAAGAACACATAATATTCTATAATTTAAGTATATGCATTCATATTGCTCAGTTTGATCGATAA 843 0.3689 MKSVIERYNKVKEDHHQLMNPASEVKFWQREVASLRQQVQYMQECHSIKDLRNLENRLEMSLKGVRMKKDQILIEEIKELHQKVNHAHHENVELNRKINLIRKENEELQKVTETKKRRKEGVVATPNPPFTISYGYDTLAPIKVGVLVFSCTGKLYEYSSTSMKSIIDRFNKQNEDHHHRLMDPTSALKVTHACMQLMGEELSGLGTNQLKHLENQLQMSLNNVRIKKASFAHSQNEELHKKIDLIHKENAEQQKVSDQYQEHIIFYNLSICIHIAQFDR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2032 280 ProSiteProfiles K-box domain profile. 171 263 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed10g2032 280 SUPERFAMILY SRF-like 133 178 IPR036879 GO:0003677|GO:0046983
Aed10g2032 280 Pfam K-box region 195 252 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed10g2032 280 Pfam K-box region 23 98 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed10g2032 280 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 143 - -
Aed10g2032 280 PANTHER MADS-BOX TRANSCRIPTION FACTOR 143 261 - -
Aed10g2032 280 Coils Coil 77 114 - -
Aed10g2032 280 Gene3D - 134 191 IPR036879 GO:0003677|GO:0046983
Aed10g2032 280 ProSiteProfiles K-box domain profile. 8 104 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed10g2032 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
Aed10g2032 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 143 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2032 Aed-Chr10 24245360 24255187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2032 139 267 MADS-box Gene Family AT2G22630 35.172 6.23e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2032 K09264 - gmx:100779647 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2032 10 24245360 24255187 Aed4g1978 4 23378890 23381715 PCT