Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2028 ATGGCCGCAGCTACCGCCTTGCTCCGCTCTCTCCGTCGCCGCGACCTCCCCTCTTCTTCTCTCACCGCCTTTCGATCGTTGACGAGTGGCACAAAAACATCATATGTAGGTCACAAGTGGGCAAGCTTGGCTCGACCATTCAGTTCAAAGCCTGCTGGTAATGATGTCATTGGAATTGATCTGGGTACTACCAATTCATGTGTTTCTGTTATGGAGGGAAAGAATCCCAAAGTTATTGAGAATTCTGAAGGAGCCCGAACAACACCATCAGTGGTTGCCTTTAACCAGAAAGGGGAGCTTCTTGTGAAAGCGACAAATGGTGACACTTTCTTGGGAGGAGAGGATTTTGATAATGCTTTGTTGGACTTTCTAGTGAACGAATTCAAAAGAACTGAGAGTATTGATCTTTCAAAGGATAAGCTTGCATTGCAGAGGCTCCGAGAAGCTGCTGAGAAAGCAAAAATAGAACTGTCTTCGACATCTCAAACAGAAATCAATCTTCCTTTCATCACTGCTGATGCATCTGGTGCAAAGCATCTGAACATCACACTGACTAGATCTAAGTTTGAGGCTTTGAGTTTAGGTGAGTACAGAGAAAAGATTCCCAGTGAAGTGGCCAAAGAGATTGAAGATGCAGTATTGGATTTGAGAACGGCAATGGCAGGAGACAATGCTGATGAAATTAAGACAAAGCTTGACGCAGCAAACAAAGCAGTCTCCAAGATTGGAGAGCACATGTCTGGTGGTTCTAGTGGTGGTGCCACTGGTGGTTCTGCAGCCGGAGGTTCTCCGGGTGGTGAGCAGGCTCCCGAGGCAGAGTATGAGGAAGTCAAGAAGTGA 840 0.4655 MAAATALLRSLRRRDLPSSSLTAFRSLTSGTKTSYVGHKWASLARPFSSKPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALSLGEYREKIPSEVAKEIEDAVLDLRTAMAGDNADEIKTKLDAANKAVSKIGEHMSGGSSGGATGGSAAGGSPGGEQAPEAEYEEVKK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2028 279 PANTHER HEAT SHOCK PROTEIN 70KDA 102 192 IPR013126 GO:0005524|GO:0140662
Aed10g2028 279 PANTHER HEAT SHOCK PROTEIN 70KDA 34 102 IPR013126 GO:0005524|GO:0140662
Aed10g2028 279 Gene3D - 57 102 - -
Aed10g2028 279 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 34 102 - -
Aed10g2028 279 ProSitePatterns Heat shock hsp70 proteins family signature 1. 59 66 IPR018181 -
Aed10g2028 279 Gene3D - 192 248 IPR029048 -
Aed10g2028 279 PANTHER HEAT SHOCK PROTEIN 70KDA 193 260 IPR013126 GO:0005524|GO:0140662
Aed10g2028 279 Gene3D Actin; Chain A, domain 4 112 191 - -
Aed10g2028 279 SUPERFAMILY Actin-like ATPase domain 90 213 IPR043129 -
Aed10g2028 279 Pfam Hsp70 protein 97 192 IPR013126 GO:0005524|GO:0140662
Aed10g2028 279 MobiDBLite consensus disorder prediction 242 279 - -
Aed10g2028 279 PRINTS 70kDa heat shock protein signature 83 95 - -
Aed10g2028 279 PRINTS 70kDa heat shock protein signature 55 68 - -
Aed10g2028 279 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 193 260 - -
Aed10g2028 279 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 102 192 - -
Aed10g2028 279 Coils Coil 136 163 - -
Aed10g2028 279 SUPERFAMILY Actin-like ATPase domain 56 102 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2028 Aed-Chr10 24224126 24227204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2028 96 215 Calmodulin-binding Proteins AT3G12580 44.262 3.26e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2028 K04043 - ini:109165234 177.178