Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2016 ATGGAGATTTCATCCATCAGAGGGTTGCATGATGATATGGAAATAATGGAGGACCCTACTTTTCTCCATCAGTGGCACCTGAGTTCTATTGATGACCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGAGACTTTACAGCATCATGCATTCACTTATCCAAACTTCAACCCCAAAACCTCCATGGAAACTGCACTTGCTGACATTGAAAGACCCACAAAACATCAAAGAAACAACATCAGCAGCTTGAATCCCAATTACAGAAGTGCTCAGACATCATCATCAGAGACACAATTTACGGACAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTGAAGCAATTGCAAGAGAAAGTAAAGGCTCTTGAGGAGGAACAAGACATGAAGAAAAATGTGGAGTCTGTAATGGATATGGAATTTTTCATGGGAGTGAAGGATCTTGTGAGAAACCTACGCTCAACCTTTTCAAATTTCATGTGA 483 0.4058 MEISSIRGLHDDMEIMEDPTFLHQWHLSSIDDPNLLPIAAAFGETLQHHAFTYPNFNPKTSMETALADIERPTKHQRNNISSLNPNYRSAQTSSSETQFTDKASVLGDAIKYLKQLQEKVKALEEEQDMKKNVESVMDMEFFMGVKDLVRNLRSTFSNFM 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2016 160 Gene3D - 62 140 IPR036638 GO:0046983
Aed10g2016 160 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 101 136 - -
Aed10g2016 160 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 137 159 - -
Aed10g2016 160 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 84 - -
Aed10g2016 160 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 131 IPR036638 GO:0046983
Aed10g2016 160 Coils Coil 106 133 - -
Aed10g2016 160 PANTHER BHLH TRANSCRIPTION FACTOR 101 136 - -
Aed10g2016 160 PANTHER BHLH TRANSCRIPTION FACTOR 137 159 - -
Aed10g2016 160 PANTHER BHLH TRANSCRIPTION FACTOR 2 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2016 Aed-Chr10 24145567 24147583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2016 100 134 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 65.714 3.36e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2016 - - gmx:100799262 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2016 10 24145567 24147583 Aed10g2016 10 24145567 24147583 ECH
Aed10g2016 10 24145567 24147583 Aed4g1961 4 23282065 23285465 PCT