Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1987 ATGTTTTTAGATGAGTTATTATGTTTTAATGCTGAAAATAGTAGCAACAGGGAAAGAATGAGGAAGAAAAACTATGATTGTGACACCCAAGTATTGTTCAAATCCAAGAACCTTGAGGCAGAAAGGAGAAGGAGGGAGAAGCTTAGTACCAGGCTTTTGATGCTGCGGTCTTTAATGAACAAAGCAACCATTCTTGAGGATGCCATCATGTACATCAAAATCCTGCAGGACAAAGTCCAGAGTCTCAGCCAAAAGCTTCATGAAATGGAAGCAACATCAGAGGAAATAAAGCCAAAGAAAGAACAATCTGATGCTGCAGAAGAGATGAAGAAATTGGGGATACAGGAAGAGGTCCAGGTGACAAAAATTGATGGAAATAAACTGTGGGTTAAAATTATCATTGAGAAGAAGTGGGGAAGGTTCAAGAAATTGATGGAGGCTATAAATACTTTTGGCATTGAACTGATAGACATCAATGTTGCAACCATAAAAGGAGCATATCTGATTACAACCTTCATGCAGGTGACTCTAGGAAAGATAGGAATATATATAATTATAAAAGGAGAATAG 570 0.3754 MFLDELLCFNAENSSNRERMRKKNYDCDTQVLFKSKNLEAERRRREKLSTRLLMLRSLMNKATILEDAIMYIKILQDKVQSLSQKLHEMEATSEEIKPKKEQSDAAEEMKKLGIQEEVQVTKIDGNKLWVKIIIEKKWGRFKKLMEAINTFGIELIDINVATIKGAYLITTFMQVTLGKIGIYIIIKGE 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1987 189 Coils Coil 72 92 - -
Aed10g1987 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 94 IPR036638 GO:0046983
Aed10g1987 189 Gene3D - 33 102 IPR036638 GO:0046983
Aed10g1987 189 PANTHER TRANSCRIPTION FACTOR DYT1 5 179 - -
Aed10g1987 189 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 179 - -
Aed10g1987 189 SMART finulus 38 81 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1987 Aed-Chr10 23975085 23975889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1987 33 175 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 51.266 1.76e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1987 - - vun:114186874 202.216