LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed10g1985	ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAACTGGTGGAGTAGTACTACTACTATTGATTCAACAAGAACTGTGTTGTTCCCTCTAAGTTCTTCATCATCGTCATCGTCATCTATTTCTTCTCCTTGTTCCGTGGCAGCTGTTAATAATGATGCAGGAAACTATAATTTGAAGGCAACAAAGTTTTGTGCTGAAACTGAAGAGACTAACAACACTTACCTGGGTTTTGTTGATGATATTGCACAGAAGCCACATAATAAGAGTGAATTATTATCATCATCAGCATCAGCCAGTGGAAGCAGCAGTGGTGGCATGTTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTCACATCTTCAACAGCATCAGAGAATTGGAATCAGCCTCTATTATTTCGTTGTAATGGAAGGGCAGCAGAGAGCAATTTCCACTCCGTGATCCATGAAGAAACGGGAATAATAGATTCTTCTAATTCACAAATCCATAGAGATTGGATCCCAAAGATCAGCTTCTCCTCTGGCAGTAGTGGAAACCAATTACAAATTGATGATGATGATGATGATAACAATTTCAAGCCATTGAGCCAAGAATTTTCACTATATCATGACCACCATAGTCTAAGTTCTTTAAACCGTGGTTGTTTCCCAATTGGATCAGCCTCATATATTGGTAACCCTTCAACTTTACAAAGCTTATATGACCCTAATCCTCATCATCCACAACACTACTCACTTTTCACCAACCGTCCCATGTCCTATTCATCAAAAGCATGTTATGGGACACCCTGCACTGAACTACCTCCAACATGGTCTAAAGTCTCTACTTTTTTGAAGCCCACAACAATTGCAAAGCAACAACAACAACACCCTAATATTGGACTTCACTTTTCTAACAACACTCCTTTCTGGAATAATGCTTCAGCCGAGGCACCTCACGACATAAGAGTAGGTACGTTTGCTTCATCATCACAATCACAATCACAATATCAAAGGCCAAGAACAACCTTTGATGAAGAGAAACACAATTCCCCAAGTACTCTATTAAACAAGCGTAATAGTGAAGAAATAACTCTAGAGTCGGTATCAATGGCTAAGAAAAATGTTTGTGAACCAGCATTAAAGAGGCCAAGAATTGAAACTCCATCTCCACTGCCAACTTTTAAGATTTTAATCATCAACTTGACATGCATGTATGGACAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATTAAGTTCCTTCACGATCAAGTCAATGTTTTGAGTACTTCATATATGAAAAATGGAGTTCCCATTCAACAGCAGCAGGGGTACTGTGATGATCTGAAAGAGTCTGAAGCTGGACCACAAGTAGAAGATTTAAAAAGCAAAGGGCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTGTCAACAGAAACCACCACTACTGCTGCTGCTGAGTTGTGGACGCCAACATTCAGAGGCACACTCTTCTCTTAA	1566	0.41	MAEEFQARICGENWWSSTTTIDSTRTVLFPLSSSSSSSSSISSPCSVAAVNNDAGNYNLKATKFCAETEETNNTYLGFVDDIAQKPHNKSELLSSSASASGSSSGGMLIDSTLQMMGFGLTSSTASENWNQPLLFRCNGRAAESNFHSVIHEETGIIDSSNSQIHRDWIPKISFSSGSSGNQLQIDDDDDDNNFKPLSQEFSLYHDHHSLSSLNRGCFPIGSASYIGNPSTLQSLYDPNPHHPQHYSLFTNRPMSYSSKACYGTPCTELPPTWSKVSTFLKPTTIAKQQQQHPNIGLHFSNNTPFWNNASAEAPHDIRVGTFASSSQSQSQYQRPRTTFDEEKHNSPSTLLNKRNSEEITLESVSMAKKNVCEPALKRPRIETPSPLPTFKILIINLTCMYGQVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGVPIQQQQGYCDDLKESEAGPQVEDLKSKGLCLVPISSTFPVSTETTTTAAAELWTPTFRGTLFS	521

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed10g1985	521	CDD	bHLH_AtbHLH_like	403	450	IPR045239	-
Aed10g1985	521	Gene3D	-	400	464	IPR036638	GO:0046983
Aed10g1985	521	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	393	442	IPR011598	GO:0046983
Aed10g1985	521	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	403	460	IPR036638	GO:0046983
Aed10g1985	521	MobiDBLite	consensus disorder prediction	322	349	-	-
Aed10g1985	521	PANTHER	TRANSCRIPTION FACTOR BHLH123	81	506	-	-
Aed10g1985	521	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	81	506	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed10g1985	Aed-Chr10	23964163	23967849	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed10g1985	299	520	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G61660	48.444	1.31e-45	162

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed10g1985	-		-	gmx:100813887	652.129

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed10g1985	10	23964163	23967849	Aed4g1926	4	23122999	23126049	PCT

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