Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1981 ATGAGGTTGTTGTTTTCAGCGAAAGTGTTTTTTCTGAGTCCATTTCTTCTGCTGATGTTCCTCTACTCTTTTTGCCACTCACTCGACAGCACCATAACCATAAACCGCCCCATCAAAGACGGCGCCGTTTTGGTCTCCAACGGCTTAGGAAACTTCGCGCTCGGTTTCTTCAGCCCGCGAAACTCCACAAACCGCTACGTTGGGATATGGTACAACAAAATCTCCGAACAAACGGTCGTGTGGGTTGCCAACAGAGACACTCCTCTTAACCACACTTCCGGTGTTCTCTCATTAAACAACCACGGAAACCTCGTACTCCACGACAACAACGACACCCGAAACCTCAACCCCGTTTGGTCCTCCAACGCTTCAATCAAATCTACAAACAACGTTGTTTCAGCCAAGCTTTTGGACACGGGAAACCTAGTTTTGATCGAAACTGACAACAACAACATTCTATGGCAGAGTTTTGATTATCCTAGTAACACTATGCTTCCGTTCATGAAACTCGGGTTGGACCGAAAAACCGGTCTGAACCGGTCCCTGGTATCTTGGAAGTCAGCAAACGACCCGGGAACCGGGAACATGACTTACGAAATCGACCCGACCGGTTTCCCGCAACTGTTTCTCTACAAAGACAAAGCTCCTCTCTGGCGGGTCGGGTCGTGGACGGGTCGTAGATGGAGCGGGGTGCCCGAGATGACTCCGAATTTTATATTCACAGTCAGCTACGTGAGCAACTCGAGCGAGGTTTCCATAATGTATGGAGTGAATGACCCAACCGTGTTCTCGAGAATGGTGCTGGATGAGACAGGCCACGTGACGAGGTCGACGTGGCAGGCTCACGAGAGGAGGTGGTTCCAAATATGGGACGCGCCGAAGGAGGAGTGCGACAACTACCGACGGTGCGGGTCGAACGCGAACTGCGACCCGTACCACGCGGACAAGTTCGAGTGCGAGTGTCTGCCTGGGTTCGTACCCAAGTTCGAGAGGGAGTGGTTCCTCAGAGACGGGTCGGGTGGGTGCGTGAGGAAGAGCAATGCGTCCACGTGTCGAAGCGGGGAGGGGTTTGTGGAGGTGGCGCGTGTGAAGGTTCCGGACACGTCGAAGGCGCGTTTGGATTCGACGGTTGGGATGAGGGAGTGCAGGGAAAGGTGCATGAGGGATTGTTCGTGTGCGGCGTACACGAGCGCGAATGAGAGTTCTGGGAGTGGCTGTGTTACTTGGCACGGAGACATGGAGGACACCAGAACTTACACGCAAGTGGGACAAAGTTTGTTCGTGCGAGTGGACAAGCTTGAGTTAGCTAAATATGCAAAGCATCCGTATGGTTCTCTAGGGAAGAAGGGAATGATAGCAGTTTTAACCGTTGCTATTTTCTTGTTTTTGTTTCTGGTGATCACTTTCGTGTATTGGTTTGTAATTATAGCAAGGAAACAATGGATGAGAAGGGGTCGCAAGTATTCCTTTCGTCTTACCTTCGATGACTCTACCGATCTACAAGAATTTGACTCTACAAAAAATTCAGATTTACCATTCTTTGATCTTAGCTCCATAGCTGCTGCAACAGACAATTTCTCTGATGCTAACAAGCTTGGCCAAGGAGGTTTTGGTTCTGTTTATAAGATTTTAATGATTTCATTTTTGTTTTGCTTTTGTAGTGGCTACATGTCACCAGAATATGCCATGGAAGGACAATTTTCAATAAAGTCTGATGTGTACAGCTTCGGAGTTTTACTTCTAGAGATCATTACAGGCAGAAAGAATAGTGGTCAATATGAAGACATTACAGCCACAAATTTAGTTGGACATATCCTCCTCCTGATGTTGATGACTGAGGCAAATCTTGGTTCTCATTGA 1860 0.4849 MRLLFSAKVFFLSPFLLLMFLYSFCHSLDSTITINRPIKDGAVLVSNGLGNFALGFFSPRNSTNRYVGIWYNKISEQTVVWVANRDTPLNHTSGVLSLNNHGNLVLHDNNDTRNLNPVWSSNASIKSTNNVVSAKLLDTGNLVLIETDNNNILWQSFDYPSNTMLPFMKLGLDRKTGLNRSLVSWKSANDPGTGNMTYEIDPTGFPQLFLYKDKAPLWRVGSWTGRRWSGVPEMTPNFIFTVSYVSNSSEVSIMYGVNDPTVFSRMVLDETGHVTRSTWQAHERRWFQIWDAPKEECDNYRRCGSNANCDPYHADKFECECLPGFVPKFEREWFLRDGSGGCVRKSNASTCRSGEGFVEVARVKVPDTSKARLDSTVGMRECRERCMRDCSCAAYTSANESSGSGCVTWHGDMEDTRTYTQVGQSLFVRVDKLELAKYAKHPYGSLGKKGMIAVLTVAIFLFLFLVITFVYWFVIIARKQWMRRGRKYSFRLTFDDSTDLQEFDSTKNSDLPFFDLSSIAAATDNFSDANKLGQGGFGSVYKILMISFLFCFCSGYMSPEYAMEGQFSIKSDVYSFGVLLLEIITGRKNSGQYEDITATNLVGHILLLMLMTEANLGSH 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1981 619 Pfam Protein tyrosine and serine/threonine kinase 555 599 IPR001245 GO:0004672|GO:0006468
Aed10g1981 619 Gene3D - 22 157 IPR036426 -
Aed10g1981 619 SMART ntp_6 352 430 IPR003609 -
Aed10g1981 619 Gene3D Phosphorylase Kinase; domain 1 489 547 - -
Aed10g1981 619 ProSiteProfiles EGF-like domain profile. 293 331 IPR000742 -
Aed10g1981 619 Pfam PAN-like domain 351 415 IPR003609 -
Aed10g1981 619 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 22 545 - -
Aed10g1981 619 SUPERFAMILY Protein kinase-like (PK-like) 547 602 IPR011009 -
Aed10g1981 619 CDD EGF_CA 296 328 - -
Aed10g1981 619 Gene3D Transferase(Phosphotransferase) domain 1 549 610 - -
Aed10g1981 619 SMART blect_4 35 160 IPR001480 -
Aed10g1981 619 Pfam S-locus glycoprotein domain 218 329 IPR000858 GO:0048544
Aed10g1981 619 Pfam D-mannose binding lectin 78 186 IPR001480 -
Aed10g1981 619 CDD B_lectin 35 160 IPR001480 -
Aed10g1981 619 PANTHER - 22 545 - -
Aed10g1981 619 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 191 IPR036426 -
Aed10g1981 619 CDD PAN_AP_plant 349 430 - -
Aed10g1981 619 ProSiteProfiles PAN/Apple domain profile. 351 431 IPR003609 -
Aed10g1981 619 ProSiteProfiles Bulb-type lectin domain profile. 29 157 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1981 Aed-Chr10 23943127 23947526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1981 555 608 Receptor kinase-like Gene Family AT4G23130 67.273 6.51e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aed10g1981 S_locus_glycop 4.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1981 - - gmx:100812814 960.674