Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1973 ATGACGTCACATTCACACTATCCACCTGACTTAGATGCCGATTCCGTCACCTCCTCCCCTCGCTCCGATCACTTCCACGACGCGCCGCCTCGCGTCCGCTTCATGTGCAGCTTCGGCGGCAAGATCCTTCCCCGCCCCCACGACAACCAGCTCCGCTACGTCGGCGGCGATACCCGAATCGTGGCCGTCCACCGCTCCATCACTTTCTCCGCCCTCATTCTCAAACTGTCCAAACTCTCAGGCATGAGCAACATAACCGCGAAGTACCAGCTCCCGAACGAGGATCTGGACGCGTTGATCTCTGTCACCACAGACGAGGACGTGGAGAACATGATAGACGAGTACGACCGCGTCGCGCAGAATCAGAACCCGCGGTCGGCGCGGCTCCGCCTCTTCCTCTTCTCCGAAGGGGAGGACTCCCGCGCCAGCAGCATCAGCTCGCTTCTAAACGGCTCAGCCAAGCGCGAGAATTGGTTCCTCGACGCCCTAAACGGCGGCGTTTCGGGGCTCGAGCGAGGCCGATCCGAAGCCTCTTCCATGGTCTCCGAAGTACCCGATTACCTCTTCGGGTTAGACAACTCCGAAGAATCACATCAAAACCAACGCGACCCGAGACCCAAACCCGGACCCGTTCTCCAAGACAGCGTTTCCGTTTCGGATCCGGGTTCACCCGCCCCGGTTGTCTCGTCCCCTTACTGTTCCACGTCATCAGCCCCCTGCGTGCCCTCTCTCCCGAACCTGCCCCCGGTTAAAACCAAACCCTTAAACCTAAACCCGGTTCCTGATACAGACCCAAAGCAAATTCAAACCGAAGCTGAAACGGATCCTCAGCAGAACCTGAACCAAAACCCAAACCTGTACCGGGGTAACACTTTAGTACACTACCCTCCAGAAGTTTCTTACCCGGCTCATTCAGTAAACCCGGTTCCTGTTTATTATGTTTCCAGTCCGGTTCGACCGGGGTCTGTGCCGGTTCCTATGCAAACCCCTTACCCGTACGTTCAACAACCATATCAAGTGGTGCAATCTCAGGTTCCAATCGGGTACCATCATATGGTTCCGGGTTCGGGTCAAGTATATGGAACAGGCATGAGGCACGTGACCCCACTGCAACCGTACAGTCCCCAGGCCGCGGTGGTTCACGACGGTTTGAAACAGCATGTGTATCATGCTGTGCCGAATTCCGGTCCGGTTCACCCAGGTATGCCGATGCCGGGTTTGGATGAACAGCATAGAGGTGGAACGGAGTTTGTGGCGGGTCGGGGCCCCAGCTCGCTAAATAACTGA 1287 0.5703 MTSHSHYPPDLDADSVTSSPRSDHFHDAPPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVHRSITFSALILKLSKLSGMSNITAKYQLPNEDLDALISVTTDEDVENMIDEYDRVAQNQNPRSARLRLFLFSEGEDSRASSISSLLNGSAKRENWFLDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNSEESHQNQRDPRPKPGPVLQDSVSVSDPGSPAPVVSSPYCSTSSAPCVPSLPNLPPVKTKPLNLNPVPDTDPKQIQTEAETDPQQNLNQNPNLYRGNTLVHYPPEVSYPAHSVNPVPVYYVSSPVRPGSVPVPMQTPYPYVQQPYQVVQSQVPIGYHHMVPGSGQVYGTGMRHVTPLQPYSPQAAVVHDGLKQHVYHAVPNSGPVHPGMPMPGLDEQHRGGTEFVAGRGPSSLNN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1973 428 PANTHER OS05G0427100 PROTEIN-RELATED 5 421 - -
Aed10g1973 428 CDD PB1_UP2 35 134 - -
Aed10g1973 428 SMART PB1_new 46 134 IPR000270 GO:0005515
Aed10g1973 428 MobiDBLite consensus disorder prediction 1 26 - -
Aed10g1973 428 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 5 421 - -
Aed10g1973 428 Gene3D - 52 136 - -
Aed10g1973 428 SUPERFAMILY CAD & PB1 domains 47 142 - -
Aed10g1973 428 MobiDBLite consensus disorder prediction 216 232 - -
Aed10g1973 428 MobiDBLite consensus disorder prediction 194 232 - -
Aed10g1973 428 Pfam PB1 domain 47 135 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1973 Aed-Chr10 23911262 23912986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1973 26 171 MAP Kinase Kinase Kinase AT5G57610 45.205 9.45e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1973 - - gmx:100803004 671.003