Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1972 ATGTCGAAAAATCCGAAGGAGAAGGAGGAACCTCTGCCGGACCACCTTCGCTGCGGCCGCACCGACGGGCGGCAATGGCGGTGCCGCCGCCGAGTGAAGGAGAATCTGAAGCTATGCGAGATTCACTACCTCCAAGGTCGCCACCGCCAGTACAAGGAGAAGGTTCCAGAGTCGCTGAAGCTTCATCGGAAGCGCAAATCAAGCAACGAGGAAGAGGAAGAGGAACCTAACACCACCACCAACGACACTACCAACAACAACGACAGCAACAACAATGTTCTCGAAGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAAAAACGCATGCTTTCGGAGGATTCCGAGGATGCGGCAGTCGGGGCTTCTTCTCCGGCGAGGAAGAAGGCTCTGAAGCAGGGCGATATGCAGCTGGAGCTCCTGAGGATGGTGCTGAAGAGAGAGGCTGAGAAGAAGAAGAGCAAGGGCAAGAAGAAGAACAACAACAAGAAGAAGAAGAACAATAAGAAGAAGGAGAATAAGAAGAAGAAAAAGGAGGAGGAAGAGGAATTGTGTTACACTGAAGGAGAGTTGAGGAGGGAATTGCCCAATGGAGTAATGGAAATCTCTCCGGCTTCGCCGACTCGCGATTACAACAATGCGGGTTCGCATTGTGATGTGAAAGTCGGTGTTGAGAGTAAAACTGTTACTCCGCGTTACCTTAGGTCCAAGAATGTTGATAGAGTCCCTGCTGGGAAGTTGCAGATTGTGCCATATGGATCAAACCTGAAGAAGGGTAAGAACAAGAAGTGTCATTGGTGCCAGAGAAGTGAATCTTTGAATCTCATCCAGTGTTCCAGCTGTCAGAGGGAGTTTTTCTGCACGGATTGCGTTAAAGAGCGGTATTTTGACAATCAAAATGAAGTTAAGAAGGCATGTCCAGTCTGTCGTGGAACTTGCACTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGACTGGTAAGAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCAAATAAATGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAATGAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTATTGCAATCACTGCAAAACACCCATTTTGGATCTCCATAGAAGTTGTTCTAGTTGTTCATATAGCCTATGCTCAAGTTGTTGTCAGGAATTAAGTGAAGGAAACGCTTCTGGAGAAATTAACTCATCTGCGTTCAAGCAACCTGATAAAATGAAACCTTGCAGTGCTAGTGAGAGCCATACTTTGGATGAGAAAACCACATCTAGTGGCAATTTAACTGATACTTCAATATTGCCTGAGTGGACAAATGGTAATGGCATTGATAGTCTATCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAAAAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCCAGTTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCGAGCTGCTCATTGTGTTTTGACACTGATCACAGTACTAACAGATACAAGCAGTTGCAAGAGGCAGCTCTAAGAGAAGATTCCAATGATAATTCCTTGTTTTGTCCCACAGTGTTGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTTGTCCAAGATGCGCTCCAAAGTACATCAAACCTCAGTTGGGATCCACTGACCATGTTCTGTACTTACCTTGAGCAGAGCATTACAAGATATGAGAATAATAAAGACTTGCTTGAATGTTGTTTGGATTGGTGGGAGGTGGAAATTAACATTAGGCAGTACTTTACTGGGTCCGTCAAACGCCATCCTCAGAGAAACACTTGGCAAGAGATGCTGAAACTAAAAGGGTGGCTTTCTTCCCAAATATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAGGTAATCGATGCTCTACCAGTTCAAGAATACATGCATCCCTTGTCTGGTCTTCTGAATTTAGCTGCAAATTTACCACATGGGAGTGCAAAACATGACATTGGGCCATATGTCTACATTTCTTATGGCTCTGCTGACAAAGAAACTGATTCAGTGACAAAGCTCTGCTATGACTCATATGATGTGGTTAATATCATGACACACACCACAGATGCCCCCCTCTCTACAGAACAACTTACAAAAATAAGAAAACTACTGAAAAAGCACAAAACTCTGTGTCAAATGGAGACTATTGCTACTGAGGAGCCACAGGAACAGAAAGTGAATGGAATGGCATCATTGCATGTTGAAGAAACCGAGCAAAAAGGCTTGCGGAGTATGGTTGAAGAAGGAATGAACTTTTTCAGGAGAGTGAATAGAACATCTTGCATCTCAACTGAAGCTAAAAAAGTTTCTAGTCAGAGCATGGACAGCAATATTTCTCAGAATGGAGAATGTGATTTCATTTCTGAATCCGATTCTGGATCTGCTTTACTTCTCCTTGGGACTGTTCAAACTACCAAATTGGCAAAACATGATAATCGAAGAAATCCCTTCGAAAGCTCAAAAAGACGTAAAAATAAGTTTACTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTACCAAAGCTCATAGAATACCTTAAAAGACACTCTGATGAATTCTCTCATACCCATGACTGTCACAAGAAGATGGTTCATCCAATTCTAGATCAGAACATTTTTCTTGACAGTACTCACAAAATGAGACTAAAGGAGGAATTTAAGATTGAACCATGGACTTTTCAGCAACATGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAAGAATTCTAAGTCCAGCGTTCATGCCATATTGGAATTTGTGTCCCCCGAAAATGTTACTGAGGGTATCCAGTTGATCGATGAGGTCCGCCTATTGCCTGAAGACCATAAAGGAAAAGCAGACATGCTGGAGGTAGATCTTGTAAAGAAAATGGCGCTTCATAGCATGAATACAGCAATTAAAGAAGTACGTCAGCTTACAAGCAAAACATGA 3165 0.4275 MSKNPKEKEEPLPDHLRCGRTDGRQWRCRRRVKENLKLCEIHYLQGRHRQYKEKVPESLKLHRKRKSSNEEEEEEPNTTTNDTTNNNDSNNNVLEDNVESRARRTSRIVKKKRMLSEDSEDAAVGASSPARKKALKQGDMQLELLRMVLKREAEKKKSKGKKKNNNKKKKNNKKKENKKKKKEEEEELCYTEGELRRELPNGVMEISPASPTRDYNNAGSHCDVKVGVESKTVTPRYLRSKNVDRVPAGKLQIVPYGSNLKKGKNKKCHWCQRSESLNLIQCSSCQREFFCTDCVKERYFDNQNEVKKACPVCRGTCTCKDCSASQCKDSESKEYLTGKSRVDRILHFHYLICMLLPVLKQINEDQNIELETEAKMKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRSCSSCSYSLCSSCCQELSEGNASGEINSSAFKQPDKMKPCSASESHTLDEKTTSSGNLTDTSILPEWTNGNGIDSLSCPPTELGGCGKSHLELRSVFPSSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHSTNRYKQLQEAALREDSNDNSLFCPTVLDISGDNFEHFQKHWGKGHPIVVQDALQSTSNLSWDPLTMFCTYLEQSITRYENNKDLLECCLDWWEVEINIRQYFTGSVKRHPQRNTWQEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVQEYMHPLSGLLNLAANLPHGSAKHDIGPYVYISYGSADKETDSVTKLCYDSYDVVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMETIATEEPQEQKVNGMASLHVEETEQKGLRSMVEEGMNFFRRVNRTSCISTEAKKVSSQSMDSNISQNGECDFISESDSGSALLLLGTVQTTKLAKHDNRRNPFESSKRRKNKFTEHLGAQWDVFRRQDVPKLIEYLKRHSDEFSHTHDCHKKMVHPILDQNIFLDSTHKMRLKEEFKIEPWTFQQHVGQAVIIPAGCPYQIKNSKSSVHAILEFVSPENVTEGIQLIDEVRLLPEDHKGKADMLEVDLVKKMALHSMNTAIKEVRQLTSKT 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1972 1054 Pfam WRC 13 54 IPR014977 -
Aed10g1972 1054 ProSiteProfiles WRC domain profile. 12 58 IPR014977 -
Aed10g1972 1054 MobiDBLite consensus disorder prediction 457 477 - -
Aed10g1972 1054 ProSiteProfiles Zinc finger RING-type profile. 268 314 IPR001841 -
Aed10g1972 1054 SUPERFAMILY Clavaminate synthase-like 580 1033 - -
Aed10g1972 1054 MobiDBLite consensus disorder prediction 50 73 - -
Aed10g1972 1054 MobiDBLite consensus disorder prediction 50 139 - -
Aed10g1972 1054 PANTHER PROTEIN B160 7 1053 - -
Aed10g1972 1054 ProSiteProfiles JmjC domain profile. 701 1014 IPR003347 -
Aed10g1972 1054 MobiDBLite consensus disorder prediction 1 24 - -
Aed10g1972 1054 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 7 1053 IPR045109 GO:0032454|GO:0033169
Aed10g1972 1054 Pfam JmjC domain, hydroxylase 900 991 IPR003347 -
Aed10g1972 1054 Gene3D Cupin 570 1023 - -
Aed10g1972 1054 MobiDBLite consensus disorder prediction 152 187 - -
Aed10g1972 1054 MobiDBLite consensus disorder prediction 155 177 - -
Aed10g1972 1054 SMART cupin_9 682 1014 IPR003347 -
Aed10g1972 1054 MobiDBLite consensus disorder prediction 436 477 - -
Aed10g1972 1054 MobiDBLite consensus disorder prediction 79 96 - -
Aed10g1972 1054 Coils Coil 150 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1972 Aed-Chr10 23898001 23904078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1972 13 52 GRF Transcription Factor Family AT2G22840 50.000 9.44e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed10g1972 JmjC 1.3e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1972 K15601 - gmx:100810673 1807.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1972 10 23898001 23904078 Aed4g1906 4 23009681 23016302 PCT