Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1970 ATGGGTAGACCACCTTGTTGTGAAAAAAATGGCCTCAAGAAAGGGCCATGGACACCCGAAGAAGACCAGAAACTTGTTGATTACATTCAGAAACATGGGTACGGAAATTGGAGAGTACTCCCAAAGAATGCTGGTGGTCAACTATTGCTTCTCGCTTACCCGGAAGAACAGACAATGAAATCAAGAATTACTGGAACACCCACATTAGAAAAAGGCTTCTAA 222 0.4279 MGRPPCCEKNGLKKGPWTPEEDQKLVDYIQKHGYGNWRVLPKNAGGQLLLLAYPEEQTMKSRITGTPTLEKGF 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1970 73 Pfam Myb-like DNA-binding domain 14 46 IPR001005 -
Aed10g1970 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 38 IPR017930 -
Aed10g1970 73 Gene3D - 11 63 - -
Aed10g1970 73 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 45 - -
Aed10g1970 73 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 45 - -
Aed10g1970 73 SUPERFAMILY Homeodomain-like 8 43 IPR009057 -
Aed10g1970 73 CDD SANT 16 46 IPR001005 -
Aed10g1970 73 ProSiteProfiles Myb-like domain profile. 9 47 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1970 Aed-Chr10 23885416 23887069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1970 1 47 MYB Transcription Factor Family AT4G21440 89.362 6.12e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed10g1970 Myb_DNA-binding 1.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1970 K09422 - thj:104812657 102.834