Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1966 ATGGGTGATGAAGAAGCATTCGCCGGAGCTTCGGGTCTCCGGCGAACGGTGGAGCTAATATTTTCAGTGCTCTCTCTCTCGCATTCGATTCGCGTCTTCGCCGGAAAGTGGCAACTGATTCGTAGCAAGCTCGAGGAGCTTCACGGTGGCTTAATCGCCGCGGGGAGCTGCGACTCTGGCGAGAGTCCGCCGTCGCTGACGCGTCTGGTGGCGGCGGTGGAGGCCACCGCGACGGAGTGCCACGATCTGTGTCGGCGCTGCGTGGACGTGTCCTACAGCGGGAAGCTTCTGATGCAGAGCGATTTGGACGTGGCGTTCGCGAAGCTCGACGCGCACGCGAAGAAGCTCTCTGAGATATACAAGACTGGAGCTTTGACAAATGGGTTCGCGCTGGTGGTGTCAAAACCGAGTCTTGGCGCTTCCAAAGAGGACATGAGGTTCTACGTGAGGGACTTGACGACGAGGATGAAGGTTGGGGATTTGGGTATGAAGCGACAAGCGTTGAGGAACCTTCTGGAAGTTGTGGTGGAGGATGCCAAGTACGTGAAGGTGATTGTGGACTTGGGTGACGTGGTTCATTTGTTGGTCGGGTTTTTGGGGTCCAACGAGGTTGAGATTCAGGAAGAGAGTGCTAAGGTTGTCTCTGTCGTTGCGGGGTTTGATTCTTACAAAGGGGTTTTGATTGGTGCGGGTGTGATTGCTCCTCTGGTTAAGGTTTTGGATTGTGGGAGTAATTTAGGGAAGGTTGCTGCTGCAAGGTGTTTGGTGAAGTTAACCGAGAATTCAGACAATGCTTGGTGTGTTTCTGCTCATGGTGGGGTTAGTGTGTTGTTGAAGATTTGTGGTGGTGGTGGTGATTGTGGTGGTGATTTGGTTGGGCCTGCTTGTGGGGTGTTGAGGAATCTCGTTGGTGTTGAGGAGATTAAGAGGTTTATGGTTGATGAAGGTGCTGTGTTAACATTCATTAGGCTTGTGAGGTCCAAGGAGGAAGCGATTCAGGTTAATTCAATAGGGTTTATTTTGAGCATTACATCTGGGGATGAAGTTGTTAGGCAGATGGTGATCAAAGAGGGAGGGATCTGCGCTTTGTTGCGAGTTTTGGATCCTAAGTGGTCTTATTCTTGCAAAACAAGGGAGGTGGCAATGAGGGCTGTTGAGGATTTGTGTTTCTCTTCACTAAGTTCCGTTGGTGTTTTGTTGAGCTATGGCTTTGTGGATCAATTGATATATTATGTTCGAAAAGGCGAAGTTTCGATTCAGGAGTTGGCGTTGAAGATGGCGTTTAGGTTGAGTGGAACATCCGAGGAGGCTAAGAAGGCATTGGGGGATGCCGGGTTTATGCCGGAGTTTGTCAAGTTTCTCAATGCAAAGTCATTTGAGGTTCGAGAAATGGCAGCTGAGGCACTCTCTGGCATGGTTATGGTGCCCAGGAATAGAAAGAGGTTTGTGCAGGATGATCATAACATAGCACTTCTTCTGCAGTTGCTTGATCCAGAGGAGGGGAATTCAGGTAACAAAAAGCACTTAATCTCTATATTGATGTCCTTAACGAATTGTACAAGTGGGAGGAAAAAGATTGTTAGTTCCGGATATGCCAAAAACATTGAAAAACTTGCGGAAGCTGAAGTTTCTTCTGATGCAAAGAAACTTGTCAAGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCGTGA 1710 0.4906 MGDEEAFAGASGLRRTVELIFSVLSLSHSIRVFAGKWQLIRSKLEELHGGLIAAGSCDSGESPPSLTRLVAAVEATATECHDLCRRCVDVSYSGKLLMQSDLDVAFAKLDAHAKKLSEIYKTGALTNGFALVVSKPSLGASKEDMRFYVRDLTTRMKVGDLGMKRQALRNLLEVVVEDAKYVKVIVDLGDVVHLLVGFLGSNEVEIQEESAKVVSVVAGFDSYKGVLIGAGVIAPLVKVLDCGSNLGKVAAARCLVKLTENSDNAWCVSAHGGVSVLLKICGGGGDCGGDLVGPACGVLRNLVGVEEIKRFMVDEGAVLTFIRLVRSKEEAIQVNSIGFILSITSGDEVVRQMVIKEGGICALLRVLDPKWSYSCKTREVAMRAVEDLCFSSLSSVGVLLSYGFVDQLIYYVRKGEVSIQELALKMAFRLSGTSEEAKKALGDAGFMPEFVKFLNAKSFEVREMAAEALSGMVMVPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKHLISILMSLTNCTSGRKKIVSSGYAKNIEKLAEAEVSSDAKKLVKKLSTNRFRSMLSGIWHS 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1966 569 Pfam Armadillo/beta-catenin-like repeat 435 470 IPR000225 GO:0005515
Aed10g1966 569 SUPERFAMILY ARM repeat 139 527 IPR016024 -
Aed10g1966 569 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 569 - -
Aed10g1966 569 SMART arm_5 261 304 IPR000225 GO:0005515
Aed10g1966 569 SMART arm_5 178 219 IPR000225 GO:0005515
Aed10g1966 569 SMART arm_5 434 474 IPR000225 GO:0005515
Aed10g1966 569 SMART arm_5 346 390 IPR000225 GO:0005515
Aed10g1966 569 SMART arm_5 220 260 IPR000225 GO:0005515
Aed10g1966 569 SMART arm_5 305 345 IPR000225 GO:0005515
Aed10g1966 569 Gene3D - 148 558 IPR011989 -
Aed10g1966 569 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1966 Aed-Chr10 23840531 23842240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1966 132 423 U-box Gene Family AT2G23140 26.846 1.16e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1966 - - gmx:100809382 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1966 10 23840531 23842240 Aed4g1900 4 22973358 22975151 PCT