Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1944 ATGGAAGCGGAGACGATAGTGACGTGGAGCACCTGGGAGGAGCTTCTCCTCGGGGCAGCGGTTTCCCGGCACGGAAGCGAAGACTGGACCGTCATTGCCGCCGAACTCAAGACCCGAACCGTTTCACAATTCACACCCGAGGTCTGTAAAGCCAAATATGAAGCGTTGCAACAGCAGTACCCTGGGGGGTGCACGGCTTTGTTTGAGGAGCTTAAGAAGAAAAGAGTGGCAGAGCTTAAGAGAGATTTGGAGCAATCTGAATATGTAATTGGGGCCCTTGAGTTGAAGATTGAATCGCTTCAGAATGGGAGGGATGAGAAAAGAGATGATTGCGATAACAAGCCTGAATTTTCAGCTCACACTGTATATGAAGGACATGGAGGGTGTTTGAAAAAACCGAGAGGGAAGAGAAAGAAGAAGGATTGCAGCAGAAACATTAATGAAATGAGTGTAAGAGAAAGTGATTTTTCAGCTGGTGTGTGTAAGGAAAGTTCTACCAGCAACTGTGGTGAGATTGTCAAATCTTCTGATATGAATGAGGAGAATGCAAACTTGAAAAAGGATGGAATAAATGAATTGATGGAGAAGCGACTAAGGTACAAGAGATTGATCCGGCAGCACGTGGACTTTGACACCATAAGGTCAAGAGTCTGTGACGGAATAATCAAGTCCATGGTGGAACTCTTAAGAGACTTGCTACTACTGAGCAACAATGCACTGGTATTCTACTCCAAGACAACTAGTAAACACAGAACTGCTGTACAACTTAGAGACCTTGCCCTCAAAACATTGACAGAGAAACTGGAGTGTTCTAGCACATCAACTGCGCGCAATGATCCTTTGGTGAAAGTCAGAAGCATGCGCCTTGGTAGCCGGAAGATTGTTGCAAAGGTAGCTGGTGGAAGCAGCTCTGCTGAAAGGGTCTCAGTTGGAGGAGTTAAGAAAGCTAGCATAGTGGATTCTACTGCACCAGCTGAAAGGGTCTCAGTTGGAGTTGAGAAAGCTAACAAAGTGGATTCTCCACCCTCAGTGGAATACTTGCCTATCAAGAAAGCTTTTGGTGGTAGTAGAACAAGAAAGTTTGGAAGTGAAAGTGAAAGTCCAAGTAAGAGAAATGCAACATCAAGGAAAAGATGGAGAGATTACTGA 1149 0.4517 MEAETIVTWSTWEELLLGAAVSRHGSEDWTVIAAELKTRTVSQFTPEVCKAKYEALQQQYPGGCTALFEELKKKRVAELKRDLEQSEYVIGALELKIESLQNGRDEKRDDCDNKPEFSAHTVYEGHGGCLKKPRGKRKKKDCSRNINEMSVRESDFSAGVCKESSTSNCGEIVKSSDMNEENANLKKDGINELMEKRLRYKRLIRQHVDFDTIRSRVCDGIIKSMVELLRDLLLLSNNALVFYSKTTSKHRTAVQLRDLALKTLTEKLECSSTSTARNDPLVKVRSMRLGSRKIVAKVAGGSSSAERVSVGGVKKASIVDSTAPAERVSVGVEKANKVDSPPSVEYLPIKKAFGGSRTRKFGSESESPSKRNATSRKRWRDY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1944 382 Pfam Myb-like DNA-binding domain 8 43 IPR001005 -
Aed10g1944 382 MobiDBLite consensus disorder prediction 363 382 - -
Aed10g1944 382 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 112 - -
Aed10g1944 382 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 276 377 - -
Aed10g1944 382 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 118 195 - -
Aed10g1944 382 CDD SANT 8 56 IPR001005 -
Aed10g1944 382 ProSiteProfiles Bromodomain profile. 200 250 IPR001487 GO:0005515
Aed10g1944 382 Pfam Bromodomain 199 251 IPR001487 GO:0005515
Aed10g1944 382 SUPERFAMILY Bromodomain 199 270 IPR036427 GO:0005515
Aed10g1944 382 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 195 276 - -
Aed10g1944 382 SUPERFAMILY Homeodomain-like 8 43 IPR009057 -
Aed10g1944 382 Gene3D - 171 280 IPR036427 GO:0005515
Aed10g1944 382 Gene3D - 7 61 - -
Aed10g1944 382 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Aed10g1944 382 SMART bromo_6 162 269 IPR001487 GO:0005515
Aed10g1944 382 PANTHER BROMODOMAIN PROTEIN 195 276 - -
Aed10g1944 382 MobiDBLite consensus disorder prediction 356 382 - -
Aed10g1944 382 Coils Coil 76 110 - -
Aed10g1944 382 PANTHER BROMODOMAIN PROTEIN 1 112 - -
Aed10g1944 382 PANTHER BROMODOMAIN PROTEIN 276 377 - -
Aed10g1944 382 PANTHER BROMODOMAIN PROTEIN 118 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1944 Aed-Chr10 23656872 23660440 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed10g1944 Bromodomain 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1944 - - gmx:100793085 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1944 10 23656872 23660440 Aed4g1881 4 22834934 22840179 PCT