Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1942 ATGTTAGCACTTGCTTTTGGAAAGAACAAAGCACCAGAACAGATTGAGGCAATCAATAGTTTGTATGTGGCTCTTGGCTCGCCACCCCTTGCGGGGTGGAAAGACATAGGAGGAGATCCTTGTTTGGAGCAATGGGAAGGTGTGAGTTGTGTCTTCTCCAACGTAACTGCCTTACGGCTGGCAGGCATGAATTTAAGTGGAGAGCTGGGAAGTAATTTGGATTTCCCATCCATCATAGAAATGGATCTTAGTGACAACCAGATTGGAGGATCCATTCCATCCACTTTGTCCCCTACTTTGAGGAACTTGTCACTGTCATCTAATCAGTTCAATGGAAGCATTCCAGATGCCTTTTCCTCATTAACTCAATTGTCAGACTTGTCATTAAAAGATAACCATCTGAATGGACACATCCCAAATGCGTTTCTACAACTCACTGGTTTGATTAATATGGATCTGTCTGGCAACAACTTGAGTGGTCAGCTGCCTTCCTCAATGGGGAATTTGTCATCTCTTATCACACTAAACTTGCAGAACAATCAACTTTCTGGGACCCTTTTTGTTCTGCAGGACCTCCCTCTTCAGGATCTGAATATAGAGAACAATATATTCTCGGGGCCAATTCCTCCAGAGTTGTTGAGTATCCCTAATTTCAGAAAAGATGGGAATCCATTTAATACTACTATCATTCCATCACCTCCAGCTGCTTCCCCTTCACCTGCTGCTATGGCTCCTTCCCCAGAAAAATCATCTTGGAAAATGGCACACAATACCTCTGATGCCATAAAAGCACCAATACCTGCAATTGCTGGGAGGTCTTTCAAAACTTCGAAATTAGTTTGGATTGCTGGTGTAGGATTTCTTATATTAATTGCATTAGGAGTTTGTCTTCTAATGTTGTGGTGCTATAAGAGAAGATCAGAGAACAAGAATTATAAGAAACACAACATGAATGTGTATAGAAGATCTTTGCATAAACGTACATGCAGTGACTCTCCTTTTGATGCAACTAATGATGAGGAGAAAGGATGGAGCTCCAAACTTCCACCCTTGCAGTCAGCACCACCACATCATATTGCTGTCATTCCAGGAGAGAATTTAATAATCAATCGAGCTATATCTACCAAAGCAACCGAAAGGCAAATAGTATCAAATTCCATCAAAGTTTATACTGTTGCATCACTTCAGCAGTACACAAATAGTTTTTCCCAAGAAAATTATATAGGGGAAGGCATGCTTGGCCCTGTTTATAGGGCTGAACTCCCTGATGGAAAGTTACTGGCAGTTAGGAAGCTGAATGCTACTGCTTCGATGGGGCAAAATCATGAACAGTTTCTTCAATTAGTTTCCAGTATCTCCAAAATTCAACATGCTAATATTGTAAAGCTTATCGGCTACTGTGCTGAGTATAGTCAACGACTACTTGTACACGAGTATTGCAGTAATGGTACCCTACATGATGCATTGCATACAGATGATAAGCTTCAGATTAAACTTTCATGGGATGATCGCATTCAGGTGTCACTTGGAGCAGCAAGATCTTTAGAGTATTTGCATGAGCACTTTCAACCACCAATTGTGCACCGAAACTTTAGGTCTGCTAATGTATTCCTCAATGACAAGTTGGAAGTGCATGTCTCTGATTGTGGATTAGGTTCTTTAGTATCCTCAGGCTCTTCCAGTCAGACAGCAGCAATCAAAGTCCCTCAACTCCATGACATAGATGCGTTGTCAAAAATGGTTGACCCCTCCTTGAATGGAGAGTATCCTAAGAAATCCTTGTCGCGCTTTGCAGACATTATTTCTTCATGTATACAGCATGAACCTGAATTTCGACCAGCAATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 1881 0.4141 MLALAFGKNKAPEQIEAINSLYVALGSPPLAGWKDIGGDPCLEQWEGVSCVFSNVTALRLAGMNLSGELGSNLDFPSIIEMDLSDNQIGGSIPSTLSPTLRNLSLSSNQFNGSIPDAFSSLTQLSDLSLKDNHLNGHIPNAFLQLTGLINMDLSGNNLSGQLPSSMGNLSSLITLNLQNNQLSGTLFVLQDLPLQDLNIENNIFSGPIPPELLSIPNFRKDGNPFNTTIIPSPPAASPSPAAMAPSPEKSSWKMAHNTSDAIKAPIPAIAGRSFKTSKLVWIAGVGFLILIALGVCLLMLWCYKRRSENKNYKKHNMNVYRRSLHKRTCSDSPFDATNDEEKGWSSKLPPLQSAPPHHIAVIPGENLIINRAISTKATERQIVSNSIKVYTVASLQQYTNSFSQENYIGEGMLGPVYRAELPDGKLLAVRKLNATASMGQNHEQFLQLVSSISKIQHANIVKLIGYCAEYSQRLLVHEYCSNGTLHDALHTDDKLQIKLSWDDRIQVSLGAARSLEYLHEHFQPPIVHRNFRSANVFLNDKLEVHVSDCGLGSLVSSGSSSQTAAIKVPQLHDIDALSKMVDPSLNGEYPKKSLSRFADIISSCIQHEPEFRPAMSEIVQDLLRMM 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1942 626 SUPERFAMILY Protein kinase-like (PK-like) 374 622 IPR011009 -
Aed10g1942 626 Pfam Leucine rich repeat N-terminal domain 12 50 IPR013210 -
Aed10g1942 626 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 11 323 - -
Aed10g1942 626 Gene3D Ribonuclease Inhibitor 13 233 IPR032675 -
Aed10g1942 626 Gene3D Transferase(Phosphotransferase) domain 1 568 625 - -
Aed10g1942 626 Gene3D Transferase(Phosphotransferase) domain 1 480 567 - -
Aed10g1942 626 SUPERFAMILY L domain-like 26 217 - -
Aed10g1942 626 PANTHER LEUCINE RICH REPEAT KINASE 2 11 323 - -
Aed10g1942 626 PANTHER LEUCINE RICH REPEAT KINASE 2 568 626 - -
Aed10g1942 626 MobiDBLite consensus disorder prediction 232 252 - -
Aed10g1942 626 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 568 626 - -
Aed10g1942 626 Pfam Protein tyrosine and serine/threonine kinase 405 561 IPR001245 GO:0004672|GO:0006468
Aed10g1942 626 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Aed10g1942 626 Gene3D Phosphorylase Kinase; domain 1 365 479 - -
Aed10g1942 626 ProSiteProfiles Protein kinase domain profile. 402 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1942 626 PANTHER LEUCINE RICH REPEAT KINASE 2 376 564 - -
Aed10g1942 626 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 376 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1942 Aed-Chr10 23637847 23643489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1942 12 562 Strubbelig Receptor Gene Family AT4G03390 46.353 8.12e-167 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Aed10g1942 PK_Tyr_Ser-Thr 1.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1942 - - gmx:100794130 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1942 10 23637847 23643489 Aed9g0614 9 4254795 4261325 PCT