Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1939 ATGGCCGATGCTGACGTGGACTTTTCCGAACTGTTCTTTGGTAATGCTGACGATGACGACGTCGCGCTTTTAATAGATATGGGGACCGTTCAGAACGTTCTTGATGAAGACGATGATTGTTACTTTCAGGAGAATAGTTCCTTGGATTCTTCATCAAAAAATGTTTCACCTAGCGAATCTGCCATTCATGACACTTTTCAGATACAAAACGGGTCACAAGTGTTAGAAGAACCACAATTTTCTAGGTTGGGCTCAGATTCAGTAACGAGTGTTTCTCCATTCTGCTCAGATGTGTCAGATTCTGGGGTCAGAGGTTCAGTTGGTGTATCTGATTCTGCAGCAAATTCTGTTCTTGATTGTGAACCTGAAAACCAGGGACCTCAATCTCAGCCTTGTTCTTCCCCCCCAAATGCTTTTCCTGATAATTTCAGTAACTCATTCTCTCCAGGTGAAAGTGATGAGGTTTTCTGCACAGAAAGAACCAGAGTGTCTAAACATGGGATACCTGCAGGTTTCCCTGGGGCACAGTCAAACAATATATCATTTTGTGGAGATAATTTGAATCTTACTATGTGGTATGGTGAAAATGAGAGCCAACAGGAAGATAGCTCATGTACATCTTTTGAAGCATCATTTATGGATGCTGATAGATCTTTGCATGGCACAACTTCAACTAATTCTACTATCGGTCAAGGTTCCCATGTTTCCAGTGATTTCATTGACTATGTATCTTCAAATTGTTACCCGGGAACACATGATGGATCCTTTGTTTCTGATTCTTCTCTTGGTTTTTCACCTAATGATATTTGTCCTCAATTGTGGCTAAATGAAGAAATGATGAATAATGTCAAGGCTGAAAATGTGGAGTTAAATGCTGATATTGCATGTATGAGTAATAGCTTGCCATCAAGCACTACTGGGTGGATGCCTTTTCAAGATAGTCAAATTATGTTAGCTGATAATGGTTATCCATCAATTCATTCTGGCAAAGTTATTTTTGATGACATGTCATCACTGTCTCTTCCAGTTTGTGCTTCGTACATGTCATATGGAGACCATTACCAAAACAAGTTTCATCATGAGGATGCTGAGGACAATGTAGGCCAAGAGGTGAAGCAAACACCTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAGTGTTTTGACAATGAGGATAATTATGCAGTTATGTCTGGGATATCCAATCAATATCAAGATAGCATTGGGGGAACTGCTAGTTTTCAAGGAAACGTGGACAATTTGAATTTAAAAGCTGCAGATATATCTTGGCCCCATGCCCAAGCACTAATTACCAGTGAGAAGCATTTTGGTTGTGTTAAGAGAGAAGGAGGGATGCAACATAAACTTATTGATTCTCATCTTTCAAAAAGAAGAACTGAGCATTTCCATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGATAAGTCAATCTGAAGGCATTGGGAATTCCCTTAATATATCTCAATCTTCTAGATATGTTGATTCCCAGTCTTACATGGCTGGGGGTACAAGGAGGAAGGCATGTGATGAGCGAAATATATTACAAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCAGAAGGATTGTTGGAAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAACATCAACTTTATATTGCTCAGGAGGAATTCTTGCAGACGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGATCTCCATTACTTAATGGGTGCACCAATGCCCAAAAAAGTGAATTGGAAACTCTGAATCTGGATGTGGATGATGACGTGCTTCCTCAGAATGATAGAGTAAAGGAAGAATATAATATGTGTGAGGATAAGTCAAGTAGATATCCAATCAAGAGCATGAATTTGTTGAAGCAAGCAAAGGGAAGGCCATCTGCTGGAACCCTTATTGTTTGCCCCACTAGTGTCCTGCGTCAATGGGCTGAGGAGTTGCGTAGCAAGGTAACTGGTCAGGCAAAACTCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTGGCTAAGTATGATGTTGTCCTAACAACTTATTCCATTGTCAGCATGGAGGTGCCTAAGCAGTATCCAGCTGACAAAGATGATGAGGAAAATGAAGTATTTGAAGATCATGCTGTACCAAGTAGGAAAAGAAAAAGCCCTTCTAATAGTAAAAGTGGCAAGAAGAAATTGGATGGCACGGCCGTTGTTCGGCCACTTGCAAAGGTGACATGGTTTAGGGTTGTCCTGGATGAAGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCTTTATGCTGACTATACATCATTTTGTTCTAAAATTAAGAGCCCAATTAGCAGAAATCCAGCAAACGGGTATTTAAAGCTACAAGCTGTCTTGAAGACAATAATGTTACGCCGGACCAAAGGCACACTTCTTGATGGGGAACCTATTATTTGCTTGCCACCTAAATATATAGAGCTGAAAAAAGTTGATTTTTCAATGGAGGAACGTGATTTCTATTCCAAACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGACCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACAGATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCCCTCTGTAACATTTGTAATGATCCTCCTGAAGATGCAGTTGTTTCAGTTTGTGGCCATGTTTTCTGTAATCAATGCATCTGTGAACATCTTACTGGTGATGACAATCAGTGCTCTGCTGCAAATTGCAAAAGTCGACTGAGCACATCTATGGTATTTTCAAAAGCCACACTGAACAGTTGTCTTTCTGACCAGGTTTGCGATAATTCACCTGGTAGTTCTGGTTCGGAAGCAGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCAAAAATAAAGGTTGCACTTGAGGTTTTGAAGTCAATATGTAAGCCACAGTGCTATACTTCAAAAAGTACTAGCACTTTCAGGAAAGATAATGACTCCCTTGGGAACCCCTTGAATGCTAACAATGGGAAATCCTTTAAAGATTCTTCTGAGAGTCAAAATTTGTCTGATGAGAATAGAAGCTCTAATGACCCAGTTACTGTTGTGGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTGCTAGAAGATTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCTGTTGTTGCAAGAGATAAAGCTGTTAATGATTTTAAAACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTCAACTTAGTGGTAGCTAGCCATGTTCTCATGCTAGATTTATGGTGGAATCCAACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGTCTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAAAGATACAGTTGAAGATCGTATTCTAGCTCTGCAGCAAAAGAAGAGAACAATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGATCGTCAGACTCGACTCACTGTGGATGATTTAAAATACTTGTTCATGATGTGA 3912 0.4047 MADADVDFSELFFGNADDDDVALLIDMGTVQNVLDEDDDCYFQENSSLDSSSKNVSPSESAIHDTFQIQNGSQVLEEPQFSRLGSDSVTSVSPFCSDVSDSGVRGSVGVSDSAANSVLDCEPENQGPQSQPCSSPPNAFPDNFSNSFSPGESDEVFCTERTRVSKHGIPAGFPGAQSNNISFCGDNLNLTMWYGENESQQEDSSCTSFEASFMDADRSLHGTTSTNSTIGQGSHVSSDFIDYVSSNCYPGTHDGSFVSDSSLGFSPNDICPQLWLNEEMMNNVKAENVELNADIACMSNSLPSSTTGWMPFQDSQIMLADNGYPSIHSGKVIFDDMSSLSLPVCASYMSYGDHYQNKFHHEDAEDNVGQEVKQTPGIFSSVGCQAYQCFDNEDNYAVMSGISNQYQDSIGGTASFQGNVDNLNLKAADISWPHAQALITSEKHFGCVKREGGMQHKLIDSHLSKRRTEHFHVEEDPDVCIIEDISHPAPISQSEGIGNSLNISQSSRYVDSQSYMAGGTRRKACDERNILQVALQDLSQPKSEVSPPEGLLEVPLLRHQRIALSWMVQKETSTLYCSGGILADDQGLGKTVSTIALILKERSPLLNGCTNAQKSELETLNLDVDDDVLPQNDRVKEEYNMCEDKSSRYPIKSMNLLKQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTGQAKLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQYPADKDDEENEVFEDHAVPSRKRKSPSNSKSGKKKLDGTAVVRPLAKVTWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDLYADYTSFCSKIKSPISRNPANGYLKLQAVLKTIMLRRTKGTLLDGEPIICLPPKYIELKKVDFSMEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPQEKQISLLKCLEASLALCNICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCSAANCKSRLSTSMVFSKATLNSCLSDQVCDNSPGSSGSEAEEFEPWSQSQPYESSKIKVALEVLKSICKPQCYTSKSTSTFRKDNDSLGNPLNANNGKSFKDSSESQNLSDENRSSNDPVTVVGEKAIVFSQWTRMLDLLEDCLKKSSINYRRLDGTMSVVARDKAVNDFKTLPEVSVIIMSLKAASLGLNLVVASHVLMLDLWWNPTTEDQAIDRAHRIGQSRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTGDRQTRLTVDDLKYLFMM 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1939 1303 MobiDBLite consensus disorder prediction 1100 1142 - -
Aed10g1939 1303 Gene3D - 1131 1298 IPR027417 -
Aed10g1939 1303 MobiDBLite consensus disorder prediction 731 766 - -
Aed10g1939 1303 MobiDBLite consensus disorder prediction 731 752 - -
Aed10g1939 1303 CDD SF2_C_SNF 1148 1255 - -
Aed10g1939 1303 CDD DEXDc_SHPRH-like 555 873 - -
Aed10g1939 1303 Pfam Helicase conserved C-terminal domain 1146 1245 IPR001650 -
Aed10g1939 1303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 974 1083 IPR013083 -
Aed10g1939 1303 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1139 1298 IPR001650 -
Aed10g1939 1303 SMART ultradead3 551 850 IPR014001 -
Aed10g1939 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 1302 IPR027417 -
Aed10g1939 1303 Gene3D - 527 616 IPR038718 -
Aed10g1939 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 542 873 IPR027417 -
Aed10g1939 1303 SMART ring_2 989 1027 IPR001841 -
Aed10g1939 1303 ProSiteProfiles Zinc finger RING-type profile. 989 1024 IPR001841 -
Aed10g1939 1303 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 483 1302 - -
Aed10g1939 1303 Gene3D - 763 874 IPR038718 -
Aed10g1939 1303 Gene3D - 649 742 IPR038718 -
Aed10g1939 1303 MobiDBLite consensus disorder prediction 117 145 - -
Aed10g1939 1303 ProSitePatterns Zinc finger RING-type signature. 1004 1013 IPR017907 -
Aed10g1939 1303 SMART helicmild6 1162 1245 IPR001650 -
Aed10g1939 1303 Pfam SNF2-related domain 575 950 IPR000330 GO:0005524|GO:0140658
Aed10g1939 1303 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 483 1302 - -
Aed10g1939 1303 SUPERFAMILY RING/U-box 987 1055 - -
Aed10g1939 1303 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 570 835 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1939 Aed-Chr10 23608201 23616823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1939 478 1302 RAD5 or RAD16-like Gene Family AT1G61140 59.645 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed10g1939 SNF2_N 1.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1939 - - gmx:100802436 2167.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1939 10 23608201 23616823 Aed9g0608 9 4218920 4228592 PCT