Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1898 ATGACGAGTCTGTTCGGGTTATCGTCTTCGTCTTCCGCCGCGTCCAACATGAAAGTGACGAACACGCCGGCGAGCGAGCTCGCCCTCACCAACCTCGCCTACTGCTCCCCCTCCGATCTCCGCAATTTCGCCGTCCCCGCCCACGACAACCTCTTCCTCGCCACCGTCGCCGATTCCTTCGTCTTATCTCTCTCATATCCTTCCATCTACTGCATTTCCTTTTTAATTCAACGATTTGCAGATACTCCTCATGATAGCATCGCCAGCGGCCAGATTGCGTTGAATGCCGTTCAACGCCGCTGTGCCAGAGTTTCTTCTGGTGATTCCGTACAAGTGAGCCGATTTGTGCCACCTGAAGATTTCAACCTCGCGCTGCTAACCATTGATTTGGAATTTGTTAAAAAGGGGAGTAAGAGTGAACAGATTGATGCTGTTCTGCTGGCTAAGCAACTTCGGAAGAGATTTATGAACCAGGTTATGACAGTGGGGCAGAAAGTATTATTTGAGTATCATGGAAATAATTATAGTTTTACTGTCAGTAGTGCTTCCGTTGAGGGCCAAGATAAGTCTGATTCTCTTGAAAGAGGGATGATTTCAGATGACACATACATTGTTTTTGAAACATCACGTGATAGTGGAATTAAGATTGTCAATCAACGGGAGGGTGCCACTAGCAACATTTTCAAGCAAAAAGAATTTAACCTTCAGTCGCTTGGTATTGGTGGCCTGAGTGCAGAATTTGCAAATATATTCCGCAGAGCTTTTGCCTCTCGTGTTTTCCCTCCCCATGTTATATCTAAATTAGGAATCAAGCATGTGAAGGGCATGCTTCTTTATGGGCCTCCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGATGCTGAACAGGATCAGAAAACCCGAGGGGATGAAAGTGAGTTGCATGTTATAATCTTTGATGAAATTGATGCTATCTGTAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGCATTGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCTCTAAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAGGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAGAATGAAAGAGAATTCTTTTATAGCTGCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACGAAGAACTACAGTGGTGCTGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCACATGCTTTAAATAGACAATTGAGTCTAGAGGATGTCACTAAGCCAGTGGAGGAAGAGAACATTAAGGTTACATCGGATGACTTTTCGAATGCACTCCACGAAGTTACTTCCGCATTTGGTGCTTCAACTGATGATCTTGAAAGATGCAGACTCCATGGCATGGTGGAGTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTCACTTGTCTCCTGGAAGGTTCCCCTGGCAGTGGTAAAACTGCACTTTCAGCTACTGTTGGTCTTGACAGCGACTTCCCATATGTCAAGATTGTTTCAAGCGAATCAATGGTTGGTCTACATGAGAGCACCAGATGTGCTCAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGTGTTATTATTCTTGATGACATTGAGAGATTATTGGACTATACTCCCATTGGTCCTCGATTTTCAAACTTGATTTGTCAGACACTACTGGTTCTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAGCTCATGGTTATTGGCACAACAAGTGAACTAAGTTTCTTGGATATGATTGGATTTTGTGCTACCTTCTCTGTTACTTACCATATTCCTACCTTGAACACAAAGGATGTAAAGAAGTTCAAGATAAATGTTAAGCTTCTCCTTTTTCTTTTCTTAAAATCACAGGTCCTAGAACAGTTGAATGTGTTTTCTGATGAAGATATTGATTCTGCTGCAGAGGCAATGAATGATATGCCTATCAGGAAGCTATACAATTTGATTGAGATGGCCGCACAAGGGGAGCAAGGTGGATCTGCAGAAGCCATCTTTTCTGGCAAAGAGAAGATCAATATCGCTCATTTCTATGATCGCCTCCAAGATGATGCTGTTAGTTTATAA 2343 0.4255 MTSLFGLSSSSSAASNMKVTNTPASELALTNLAYCSPSDLRNFAVPAHDNLFLATVADSFVLSLSYPSIYCISFLIQRFADTPHDSIASGQIALNAVQRRCARVSSGDSVQVSRFVPPEDFNLALLTIDLEFVKKGSKSEQIDAVLLAKQLRKRFMNQVMTVGQKVLFEYHGNNYSFTVSSASVEGQDKSDSLERGMISDDTYIVFETSRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSAEFANIFRRAFASRVFPPHVISKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQKTRGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEIGLPDENGRLQILQIHTNRMKENSFIAADVNLQELAARTKNYSGAELEGVVKSAVSHALNRQLSLEDVTKPVEEENIKVTSDDFSNALHEVTSAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSPGSGKTALSATVGLDSDFPYVKIVSSESMVGLHESTRCAQIIKVFEDAYKSPLSVIILDDIERLLDYTPIGPRFSNLICQTLLVLLKRLPPKGKKLMVIGTTSELSFLDMIGFCATFSVTYHIPTLNTKDVKKFKINVKLLLFLFLKSQVLEQLNVFSDEDIDSAAEAMNDMPIRKLYNLIEMAAQGEQGGSAEAIFSGKEKINIAHFYDRLQDDAVSL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1898 780 PANTHER VESICULAR-FUSION PROTEIN NSF 12 42 IPR039812 GO:0016887|GO:0035494
Aed10g1898 780 PANTHER BNAA03G50350D PROTEIN 86 775 - -
Aed10g1898 780 PANTHER BNAA03G50350D PROTEIN 12 42 - -
Aed10g1898 780 Pfam ATPase family associated with various cellular activities (AAA) 276 416 IPR003959 GO:0005524|GO:0016887
Aed10g1898 780 Pfam ATPase family associated with various cellular activities (AAA) 557 667 IPR003959 GO:0005524|GO:0016887
Aed10g1898 780 SUPERFAMILY Cdc48 domain 2-like 118 221 IPR029067 -
Aed10g1898 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 743 IPR027417 -
Aed10g1898 780 SUPERFAMILY ADC-like 15 115 IPR009010 -
Aed10g1898 780 ProSitePatterns AAA-protein family signature. 387 405 IPR003960 GO:0005524|GO:0016887
Aed10g1898 780 CDD AAA 546 672 - -
Aed10g1898 780 SMART AAA_5 552 686 IPR003593 -
Aed10g1898 780 SMART AAA_5 272 419 IPR003593 -
Aed10g1898 780 CDD AAA 264 417 - -
Aed10g1898 780 PANTHER VESICULAR-FUSION PROTEIN NSF 86 775 IPR039812 GO:0016887|GO:0035494
Aed10g1898 780 SMART CDC48_2_2 141 204 IPR004201 -
Aed10g1898 780 Gene3D - 118 216 - -
Aed10g1898 780 Gene3D - 514 685 IPR027417 -
Aed10g1898 780 Pfam AAA+ lid domain 443 486 IPR041569 -
Aed10g1898 780 Gene3D - 226 417 IPR027417 -
Aed10g1898 780 Pfam Cell division protein 48 (CDC48), domain 2 141 195 IPR004201 -
Aed10g1898 780 Gene3D - 11 115 - -
Aed10g1898 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 514 IPR027417 -
Aed10g1898 780 Gene3D - 418 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1898 Aed-Chr10 23270555 23279340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1898 267 503 Calmodulin-binding Proteins AT3G56690 36.508 4.75e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1898 K06027 - gmx:100779259 1303.5