Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1897 ATGGCCTTGGAGCACTACATTTCTGAGGAATGGAAAGCCATCCCAAGCCCCACCATGACAGTGACAGAAAATTTGGATGGGTGCTTTGATTGCAACATCTGCTTAGATTTTGCACATGAGCCAGTGGTCACTCTCTGTGGCCACTTATACTGCTGGCCCTGCATCTACAAGTGGCTCCACGTCCAAAGTGCTTCTCTTGCACCTGATGAGCACCCTCAATGCCCTGTTTGCAAGGATGACATATGCCACACTACAATGATTCCTCTCTATGGCCGTGGCCAGGCCACGGCCATAACAGCTCATGATGGAAAGCCATCATCATCATCCTATAGAGGCAGTTTTGTACCACCAAGACCACCTGCTTTGGGTGCTCAATTTCTCATGGCAGCAGCATCATCTCAAAGTGGTGATCAACAACTTCCATATCACAATCCTTATCAGAATCAGCAATTCAACAACCCTCCTTTGTACCAAGATGAGGATGAATCGACATCTCAGATGTTGAATCTTGGTGGTGCCACCACTGCGATGGTGACACCAGGGTTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCAGAGTCTTTGGAAGCAATAACTCGGAAAATTTACACACCTACCCAAATTCTTATCACCCGGGGGGAAGTAATTCCCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAATAAATCATTGAACAGAATTTCAATTTTTCTGTTCTGTTGCTTCCTTCTGTGTCTCATCGTCTTTTGA 762 0.4646 MALEHYISEEWKAIPSPTMTVTENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMIPLYGRGQATAITAHDGKPSSSSYRGSFVPPRPPALGAQFLMAAASSQSGDQQLPYHNPYQNQQFNNPPLYQDEDESTSQMLNLGGATTAMVTPGFPHLVVGMFGEMFYTRVFGSNNSENLHTYPNSYHPGGSNSPRLRRQEMQANKSLNRISIFLFCCFLLCLIVF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1897 253 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
Aed10g1897 253 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Aed10g1897 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 253 - -
Aed10g1897 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 253 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aed10g1897 253 SMART ring_2 31 77 IPR001841 -
Aed10g1897 253 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Aed10g1897 253 CDD RING-HC_AtRMA_like 29 78 - -
Aed10g1897 253 SUPERFAMILY RING/U-box 23 90 - -
Aed10g1897 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 101 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1897 Aed-Chr10 23239441 23240202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1897 6 239 C3H Transcription Factor Family AT4G27470 37.712 5.76e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1897 K10666 - gmx:100779793 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1897 10 23239441 23240202 Aed9g0570 9 3993010 3993708 PCT