Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1895 ATGCAAAATCAACAAACAGTGAGAGAAGAAGACGATGAAGGTCCACCACCGGGGTGGCAACCTCTCCCAACTCAGCCACCGCTGCCGCCGTCACGTCCATCTGGTTGGGCTCAAATGGTTTGCGGCTCTTGTTGTCGCCTGCTTTCATATCCTCGAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACTGTCAACATTGTATTAGAAGTAACCCACTCCTTCGTTACAGCTGATCAGGTTGGGCAAGTTAAGTGTGGCAGTTGTGCAGTATTGTTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCCTCATGCCGATTTGTGACAGAAATTGGGGACAATATAAAGCACACAACAAGCGGCCTCCATGGTCTGTACAGCAAAGGAAACCGTCTCCTCCCAAAACTGGTTGTTAGTGACCTGACTGTCGGCTTAATAGATGGATAA 453 0.4768 MQNQQTVREEDDEGPPPGWQPLPTQPPLPPSRPSGWAQMVCGSCCRLLSYPRGAKHVKCSCCQTVNIVLEVTHSFVTADQVGQVKCGSCAVLLMYPYGASQVRCSSCRFVTEIGDNIKHTTSGLHGLYSKGNRLLPKLVVSDLTVGLIDG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1895 150 MobiDBLite consensus disorder prediction 16 31 - -
Aed10g1895 150 Pfam LSD1 zinc finger 86 110 IPR005735 -
Aed10g1895 150 Pfam LSD1 zinc finger 41 65 IPR005735 -
Aed10g1895 150 MobiDBLite consensus disorder prediction 1 31 - -
Aed10g1895 150 MobiDBLite consensus disorder prediction 1 15 - -
Aed10g1895 150 PANTHER PROTEIN LOL2 24 116 - -
Aed10g1895 150 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 83 111 IPR005735 -
Aed10g1895 150 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 38 68 IPR005735 -
Aed10g1895 150 PANTHER PROTEIN LSD1 24 116 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aed10g1895 zf-LSD1 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1895 - - gmx:100780865 174.481