Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1887 ATGGATGGAGATAGCAGCAATTCTTGGATTAGGAGGACCAAATTCTCCCACACAGTGTGTCACAGGTTGAACTATTCAAGTTCTGGATTTGGCTCTTTCAGCATTCAGCCAAGGGCACAACACAACAGTTCTAGTCTGAAATCAAGGCCAGAAGTGACTTTTGCTCCCATGGCTTCTTCACAGGCTCAGAAGAAACCAATAATGAACAAGCAGAGATCTTTGTCACCTTTGCCTCAGACCTCTCTCTCTGAGACCTTCAAGGAAGCCAGACATGAGCAGAAGAGGTTCTCAACACCAGGTCCAAGGAGGAAAGAGCAGCAGGACAAGAGAATCATGGGGAAGTTGCTCAACAAGGATTCTTCTCATGTGTCCAATTCTACCAAATCCCCTTACAGCAGTCCAATTAGGCACCTTGCTTCGATGAAATTGAGTGACAAGTCGTCGAAGCAGCACCGCAAGGATTTGGGATGGACTAAGTATTTTGACCATGGAGGGGGAAAGGTTACTGCTGTGGAAACAGCTGAGGAATGGAATGTTGACCTCTCCAAGCTCTTTGTTGGTGTTAGGTTTGCCCATGGTGCTCACAGTAGGCTCTACCATGGCATGTATAAGGATGAATCTGTGGCTGTCAAAATTATCACCGTACCGGATGATGACGAAAATGGAATGTTGGCCGATCGGTTAGAGAAACAATTCATTAGAGAAGTCTCACTTTTATCTCGCCTCCATCATCAAAATGTTATCAAGTTCGTAGCAGCATGCAGAAAGCCACATGTTTATTGTGTTATCACAGAATATCTATCAGAAGGTTCCTTGAGGTCATATTTGCATAAGTTGGAAAGAAAAACTATTTCTCTAGAGAAGCTGATTGTGTTTGCTCTGGATATTGCTCGTGGAATGGAATATATACACTCTCAAGGTGTCATTCACCGAGACCTTAAACCGGAGAATGTCCTTATCAATGAAGACTTTCACCTTAAGATTGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGTGACTTATTTGCTGACGACCCTGGTACCTACCGCTGGATGGCACCCGAGATGATCAAACGAAAATCCTATGGAAGAAAGGTTGATGTATATAGTTTTGGGCTTATCTTATGGGAAATGGTGACTGGAACTTTACCATATGAGGATATGACTCCCATCCAGGCTGCTTTTGCAGTAGTAAATAAGAATTCAAGGCCAGTTATTCCTTCAGACTGTCCACCCGCAATGCGCGCCTTAATCGAGCAATGCTGGTCTTTGCATCCAGACAAGAGGCCCGAGTTCTGGCAGGTTGTGAAGGTATTAGAACAATTTGAATCTTCGCTTGCTCGTGATGGAACTCTGACTCTGCTGCAAAATCCTTGTTGCCAAGATCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGTCCTGTGCATCATAACAATGGCCCTGTGCCTAAACCCAAATTTACATGA 1476 0.4411 MDGDSSNSWIRRTKFSHTVCHRLNYSSSGFGSFSIQPRAQHNSSSLKSRPEVTFAPMASSQAQKKPIMNKQRSLSPLPQTSLSETFKEARHEQKRFSTPGPRRKEQQDKRIMGKLLNKDSSHVSNSTKSPYSSPIRHLASMKLSDKSSKQHRKDLGWTKYFDHGGGKVTAVETAEEWNVDLSKLFVGVRFAHGAHSRLYHGMYKDESVAVKIITVPDDDENGMLADRLEKQFIREVSLLSRLHHQNVIKFVAACRKPHVYCVITEYLSEGSLRSYLHKLERKTISLEKLIVFALDIARGMEYIHSQGVIHRDLKPENVLINEDFHLKIADFGIACEEAYCDLFADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMVTGTLPYEDMTPIQAAFAVVNKNSRPVIPSDCPPAMRALIEQCWSLHPDKRPEFWQVVKVLEQFESSLARDGTLTLLQNPCCQDHKKGLLHWIQKLGPVHHNNGPVPKPKFT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1887 491 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 467 - -
Aed10g1887 491 Gene3D Phosphorylase Kinase; domain 1 172 268 - -
Aed10g1887 491 MobiDBLite consensus disorder prediction 57 84 - -
Aed10g1887 491 MobiDBLite consensus disorder prediction 57 137 - -
Aed10g1887 491 SMART serkin_6 184 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1887 491 PRINTS Tyrosine kinase catalytic domain signature 411 433 IPR001245 GO:0004672|GO:0006468
Aed10g1887 491 PRINTS Tyrosine kinase catalytic domain signature 302 320 IPR001245 GO:0004672|GO:0006468
Aed10g1887 491 PRINTS Tyrosine kinase catalytic domain signature 367 389 IPR001245 GO:0004672|GO:0006468
Aed10g1887 491 PRINTS Tyrosine kinase catalytic domain signature 264 277 IPR001245 GO:0004672|GO:0006468
Aed10g1887 491 PRINTS Tyrosine kinase catalytic domain signature 348 358 IPR001245 GO:0004672|GO:0006468
Aed10g1887 491 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 467 - -
Aed10g1887 491 ProSiteProfiles Protein kinase domain profile. 184 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g1887 491 MobiDBLite consensus disorder prediction 85 116 - -
Aed10g1887 491 CDD STKc_MAP3K-like 191 440 - -
Aed10g1887 491 SUPERFAMILY Protein kinase-like (PK-like) 171 440 IPR011009 -
Aed10g1887 491 Pfam Protein tyrosine and serine/threonine kinase 190 440 IPR001245 GO:0004672|GO:0006468
Aed10g1887 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Aed10g1887 491 MobiDBLite consensus disorder prediction 118 134 - -
Aed10g1887 491 Gene3D Transferase(Phosphotransferase) domain 1 269 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1887 Aed-Chr10 23173449 23177494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1887 4 491 MAP Kinase Kinase Kinase AT5G58950 57.358 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Aed10g1887 PK_Tyr_Ser-Thr 2.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1887 - - gmx:100784454 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1887 10 23173449 23177494 Aed9g0561 9 3922069 3925902 PCT