Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1886 ATGGAGAACATTCCTAGTTCATCAAGAAGTGATATTGAGAGGAATAGAAGACATCAAATGAAGGATCTTTACTCCAAGCTCAACTTAGTTTTGCCTCAACAAAGCTCAAGGGAGGCCACATCGAGGCCAGATCAGATAGGTGAAGCAACAAACTACATAAAGAGTTTGCAGATTAAGTTGGAGAAAATGAAGGAGAAAAGAAACAACTTAATAGACATTAATGAAAGGTCAAAAAATGATGCTAGCATTAGTAATATGGGGTTGATGAAGTCTCCACAATTTAAGATCCAACAAACGGGTTCAGCCTTAGAGATTGTTCTAGTAACTGGGTTGGATTGTCAGTACTTCATATTCAATGAGACCATTCGTGTTCTTCAAGAAGAAGGATCAGATATTGTTAATGCCAGTTACACAGTTGTTGAAAACACAGTTTTTCATACAATACACTGTGAGGTAGGGGAATCTGCCAATGGAGCGTTGAGGATATCTGAGAAACTAAAGAAGTATCTCAATCTCAATGGTTGGTAG 528 0.3788 MENIPSSSRSDIERNRRHQMKDLYSKLNLVLPQQSSREATSRPDQIGEATNYIKSLQIKLEKMKEKRNNLIDINERSKNDASISNMGLMKSPQFKIQQTGSALEIVLVTGLDCQYFIFNETIRVLQEEGSDIVNASYTVVENTVFHTIHCEVGESANGALRISEKLKKYLNLNGW 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1886 175 Gene3D - 6 84 IPR036638 GO:0046983
Aed10g1886 175 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Aed10g1886 175 SMART finulus 10 62 IPR011598 GO:0046983
Aed10g1886 175 PANTHER TRANSCRIPTION FACTOR BHLH162 7 171 - -
Aed10g1886 175 Pfam Helix-loop-helix DNA-binding domain 8 57 IPR011598 GO:0046983
Aed10g1886 175 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 171 IPR015660 GO:0003700|GO:0006357
Aed10g1886 175 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 69 IPR036638 GO:0046983
Aed10g1886 175 Coils Coil 46 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1886 Aed-Chr10 23167229 23167969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1886 6 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.750 2.22e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed10g1886 HLH 4.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1886 - - gmx:100810793 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1886 10 23167229 23167969 Aed9g0560 9 3917935 3918730 PCT