Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1878 ATGGCTGCAACTTCCCTCTCCTCCGCTCTGAATTCCCTCTCCTCTCTTTCCCTCTCCTCCACCTCCTCCCGCTTCTCTCTCCTCCCTCCAGCATCCCTCAAGCCCTCCTCCCTCCTCTCCAGGCCTCTCACTCTCAAATCCAAATCCTCCGACGAAATCGACACCTCCTTCTTCGACAGCGTCAACCCGCAAGACGACATCACCTTCAGCCCCCCGGAGCCCCCTGAGGGCTTCGTCCCGCCCCCCTCCTTCGACGACGGCCCCCTCGAGGCCGAGGACGACATCGCTGCCGCCTACGAGGAGCTCTACGGCCCCGGCTACAGCGGCGTCTCGGTCCTCGGCAACGACGTCTACGTGATGGACGCCAAGGTGAAGAAGGAGACCGGGTTCGGGTCGGGCGCGAAGAAGGAGAAGATCAGGGACGGGTTCGAGGAGAGGGTGGTGCAGGTCAGGAGGGTCACCAAGGTCGTCAAGGGAGGCAAGCAACTCAGGTTCCGCGCTGTCGTCGTCGTCGGCGACAAGAAGGGTCAGGTCGGCGTCGGAGTTGGCAAGGCCAAGGAAGTCATTGCCGCCGTTCAGAAGTCTGCCGTCAATGCCAGGAGGAACATCATCAAGGTCCCCATGACTAAGTACTCCACTTTTCCCCACAGAGCTGATGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCTGCTTCTCCCGGTACTGGAGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTTGAAATGGCAGGAGTTGATAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCACTCAACAATGCCAGAGCGACCATTGCGGCTGTGCAGAAAATGAAGCAGTTTCGTGAGGTCGCTGAGGAGCGTGGGATTCCAATGGAAGAATTATGGAAGTAA 900 0.5767 MAATSLSSALNSLSSLSLSSTSSRFSLLPPASLKPSSLLSRPLTLKSKSSDEIDTSFFDSVNPQDDITFSPPEPPEGFVPPPSFDDGPLEAEDDIAAAYEELYGPGYSGVSVLGNDVYVMDAKVKKETGFGSGAKKEKIRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIIKVPMTKYSTFPHRADGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVDNALGKQLGSNNALNNARATIAAVQKMKQFREVAEERGIPMEELWK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1878 299 ProSitePatterns Ribosomal protein S5 signature. 160 192 IPR018192 -
Aed10g1878 299 Gene3D - 129 204 - -
Aed10g1878 299 MobiDBLite consensus disorder prediction 61 80 - -
Aed10g1878 299 Gene3D - 209 298 IPR014721 -
Aed10g1878 299 SUPERFAMILY Ribosomal protein S5 domain 2-like 213 291 IPR020568 -
Aed10g1878 299 PANTHER RIBOSOMAL S SUBUNIT 45 299 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed10g1878 299 TIGRFAM rpsE_bact: ribosomal protein uS5 142 296 IPR005712 GO:0003735|GO:0006412|GO:0015935
Aed10g1878 299 Hamap 30S ribosomal protein S5 [rpsE]. 120 296 IPR005712 GO:0003735|GO:0006412|GO:0015935
Aed10g1878 299 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 45 299 - -
Aed10g1878 299 ProSiteProfiles S5 double stranded RNA-binding domain profile. 143 206 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed10g1878 299 Pfam Ribosomal protein S5, N-terminal domain 143 207 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aed10g1878 299 Pfam Ribosomal protein S5, C-terminal domain 220 290 IPR005324 GO:0003735|GO:0005840|GO:0006412
Aed10g1878 299 SUPERFAMILY dsRNA-binding domain-like 139 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1878 Aed-Chr10 23105143 23107360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1878 143 283 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 2.29e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1878 K02988 - gmx:100820232 427.557