Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1877 ATGAGAAGAAACACCAAGCCATCAATCACCACCAATGGCAGCACTAACTCATCCTCATTCTCCTCATCAAACACAACAAGCCTTGCACCACAAAACATGAGCGTTTATCCTCCTCAAAGTGTTGTCTTTAACAACTTCCCTCACCACCACAACATCACTAGTGGACAACTTGGCTTTCCTCATCAACAACCTTATTTGGTTCCATATGATCCGAACATGATGCAGTTCCCGATGATCAATGTGCCTCATTCCTTTCCTCCCCCACTGATGAATCTGCCTCCTTTGTCTCCAACGGGGGCTTATGTAATGCCAAGTTTTGAACTTCAAAGGATGTCGGAGAAAGCAGAATTTAGGAAGAGGATGATTGAAATAAGGAAGTGGAAAATTGCTAGGGATAAAAGGAGGAAACAAGTAAGACACAGGACTCAGAATTCTAGTCATGTGACTCCTAATAGTACTGTGGCTCCTAAGAGTACAAGGGTACAATCTGTTCCTAGTGGGGGATCAACCTGCAATATTTTCACCACCCCAGATGGGAAGGTGCTAGAAGAAATTCTGACAAAGCAGTTAAGGAGCAGTGATGTTGGTGTCCTAGGTCGCATTGTGATCCCAAAGTTAGTATTACTTTCTGGTGGTCAAAAAAGGGAGGCTGAGGAAAAGCTTCCGGCACTGTGCACGTCGAACAAGGAAGGAATCGAGATTGTAATGAGGGATATTCATTCTGGGATTGAATGGAACTTCATATACAAATACTGGATCAATAACGCTGGTAGAATGTATGTTATCGACGGTGTAGGGAAATTTGTGAACCATTACAGACTTCAAATGGGAGATTTTTTAACCCTTTACGAGGACAAATCGAAAAATCTGTATGTGTCTACAAGAAAGGTTGAGCGAAACCTAGAAGAGTCTCATGGGCCCTTGCCAAACATGGGAATGTATGATGCAAATGAATGTTTGGCTTCCTTGACAAGAGACGTTAGCCATGAGAGGAAATCATCAGAAGCTGCTGCTATGAACCTTGAGTGCAATGGTGCTGCTGGTGGAAGTTCTTCTTCAAGTGGAGGAACAAAAAAATGTAACATAATGCCGAACAATTCTGCTGCTGAGGAAGAGGTGGCATCAAACCAATTGCATCATCAATTCATGGCGCCAATCATGAACAATGCTGCTGAGGAAGAAGTGGCATCATCAAACCAAGCAGCACAAGAAGAAGTTGCAGCAGCAGCAGCAGCAGCACCCCTCGATGATGATGAAACTGTCTATGGAGGCCTTGAAAAACTCTTTGAAATTGAGAATAATTATAATATTTGGTAG 1317 0.4298 MRRNTKPSITTNGSTNSSSFSSSNTTSLAPQNMSVYPPQSVVFNNFPHHHNITSGQLGFPHQQPYLVPYDPNMMQFPMINVPHSFPPPLMNLPPLSPTGAYVMPSFELQRMSEKAEFRKRMIEIRKWKIARDKRRKQVRHRTQNSSHVTPNSTVAPKSTRVQSVPSGGSTCNIFTTPDGKVLEEILTKQLRSSDVGVLGRIVIPKLVLLSGGQKREAEEKLPALCTSNKEGIEIVMRDIHSGIEWNFIYKYWINNAGRMYVIDGVGKFVNHYRLQMGDFLTLYEDKSKNLYVSTRKVERNLEESHGPLPNMGMYDANECLASLTRDVSHERKSSEAAAMNLECNGAAGGSSSSSGGTKKCNIMPNNSAAEEEVASNQLHHQFMAPIMNNAAEEEVASSNQAAQEEVAAAAAAAPLDDDETVYGGLEKLFEIENNYNIW 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1877 438 CDD B3_DNA 185 292 IPR003340 GO:0003677
Aed10g1877 438 MobiDBLite consensus disorder prediction 133 169 - -
Aed10g1877 438 Gene3D - 175 306 IPR015300 -
Aed10g1877 438 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 2 438 - -
Aed10g1877 438 SUPERFAMILY DNA-binding pseudobarrel domain 185 294 IPR015300 -
Aed10g1877 438 MobiDBLite consensus disorder prediction 1 31 - -
Aed10g1877 438 Pfam B3 DNA binding domain 187 296 IPR003340 GO:0003677
Aed10g1877 438 SMART B3_2 186 298 IPR003340 GO:0003677
Aed10g1877 438 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 2 438 IPR044800 GO:0003700
Aed10g1877 438 MobiDBLite consensus disorder prediction 143 169 - -
Aed10g1877 438 ProSiteProfiles B3 DNA-binding domain profile. 186 298 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1877 Aed-Chr10 23099847 23102389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1877 175 293 B3 DNA Binding Superfamily AT1G28300 49.580 9.26e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed10g1877 B3 2.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1877 - - gmx:102662409 247.284