Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1873 ATGGACACAAGCAGGTCTGAGGGGAAGAGGGTCTTGAGGTTCAAAGAGCAATACGACGACGACGACGACGACGACGACGACGACGGTGATGATGAAGAAGAAGAAGAAGTAGAAGAGGTGAGTCATGAGATTGGTTTTAGAGAAGATGGAAGGAAGAATAAGAGAGATCTCTATGGAAAGAGAGGAGGGTCCAACAAAGGTGGAGGGTCAATGACACCTTCTTGTCAAGTGGAAAATTGTGATGCTGATCTAAGTGAAGCCAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCATTCCGTACAGATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGGTTCCATGAGCTATCAGAATTTGATGAGTCAAAGAGGAGTTGTAGAACGCGATTGGCTGGGCATAATGAGAGGCGTCGCAAAAATGCAGTTGACTAA 459 0.4662 MDTSRSEGKRVLRFKEQYDDDDDDDDDDGDDEEEEEVEEVSHEIGFREDGRKNKRDLYGKRGGSNKGGGSMTPSCQVENCDADLSEAKQYHRRHKVCEYHAKAHSVQMAGLQQRFCQQCSRFHELSEFDESKRSCRTRLAGHNERRRKNAVD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1873 152 MobiDBLite consensus disorder prediction 18 39 - -
Aed10g1873 152 MobiDBLite consensus disorder prediction 40 61 - -
Aed10g1873 152 Gene3D - 65 136 IPR036893 GO:0003677|GO:0005634
Aed10g1873 152 Pfam SBP domain 75 148 IPR004333 GO:0003677
Aed10g1873 152 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Aed10g1873 152 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 149 IPR044817 GO:0003677
Aed10g1873 152 MobiDBLite consensus disorder prediction 1 17 - -
Aed10g1873 152 MobiDBLite consensus disorder prediction 1 76 - -
Aed10g1873 152 SUPERFAMILY SBT domain 73 151 IPR036893 GO:0003677|GO:0005634
Aed10g1873 152 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 24 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1873 Aed-Chr10 23070300 23072295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1873 75 152 SBP-box Gene Family AT2G33810 75.641 3.98e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed10g1873 SBP 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1873 - - gmx:100527199 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1873 10 23070300 23072295 Aed9g0551 9 3838550 3840284 PCT