Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1854 ATGGAGGGCGAGGGTTGTTCGGATGGAGAGAATAATCAGAAAAGGGGTGGCACTGATGATGATAGCAATGATGTTCAGATTAACAACAACAATATTAACGGAAGCAGTAGCAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAACTACCCTTCGGAGACGATGAGGGTAGAGCTGTCTGAGAAATTGGGGTTGTCAGATCGGCAGCTTCAGATGTGGTTCTGCCACAGGAGGTTGAAAGACAAGAAGGAATTGCCATCTAAGAAGCTGCTGCGGAAGGTGCCGGCAGAGCCATTGCCGGATTCGCCAAGGGATGACCCCAGGTTGGCCCTGGAGCTTGCTAACGAGTATGGATCCGGGTCCGGTTCAGGTTCCAGTCCGTATGCTCGAGTGGAGCCCCTGAATGTGGTTCGGGGTTTGCCTGGTTATTATGAGTCTTCGCAGTCTAAGTTGGAGCTTAGAGCAATTGCTTGTGTCGAGAAACAGTTAGGGGAGCCATTGAGGGAGGATGGACCAATTCTAGGAATAGAGTTTGATCAATTGCCACCAGATGCCTTTGGGGCACCTATAGCAGCAGTTACAGAACAGAAGAAGCTACCTAGTTTTGCCTATGACAGTAAAATATATGAAAGACATGATGCTAGAACAAATAAGGCTATGGTGGCAAGGACATTCCGTGACAATCAATTTCTACCAAACAAGTCTGGCATTAGGTCTGATGCTTCTGGACAGTTCAGCCAATCTCATTTACATGATCCAATGGAAGGTTCTGTCAGAAATCCTCCTTTTGCACATGGAAATGAACATCTACCTAGAACTCATGCTACTAAAGGTCATTCTTCTCGTGTTCGTCTTTTGTCTCAACAAGACAAACAGTTGATTCCCTATCAATCTCCTTCTCGAGATGATGATGTTGCCCCCGAAAGGGAATTGTACCCAAACATAGCTAATGTTGGAAAGAACTCTCACTTTACTGATCACCAAATTGTTGGGACAGAAAATCATGCTATACCTAGTGCACAGGTTTTGCATAACAATGCATCACGGAGTGAGAAGAAACGAAAGAGTGATGATGCCCAGGATGCTGAAGCCCATGAGATGAAAATCCGGAAAGAGCTTGAGAAACAAGATAACCTTAGACGAAAGGCAGAGAGAATGAGGCAAAGAGAAGAGCTTCGGAAAGAGAGAGAAGTAGAGAGAAGGAAAGCTGCTCTTGAGAAGGCAACTGCCCGTAGAATGGCCAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATCCATCTTGATTTTGATACTCTGCAACACCTTGAGTCATTTAGGGATTCATTGAGTGTTTTCCCACCAAAGAGTGTAAAGCTAAGAAAACCATTTGCAATCAAACCCTGGATCAACTCAGAAAATAATGTTGGCAATCTTCTCATGGTTTGGAGGTTTTTGATTGACTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGACTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGGACAAATCAGTATGGTGCTGCTAATTCTGGAGGTGGCCATCCAGAAATTGTGGAAGGGGCGTATGCATGGGGTTTTGACATACGAAATTGGCATAAGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGCATTATCTTCTGGATATGGACCACAGTTGAAGAAAAGAAGTATTTCATGGACATATGCAAATAATAAAGACGAGGGCAGAAGTTGTGAAGATGTCATTTCTACACTTCGTAATGGTTCAGCGGCTGAAAATGCAGTTGCAAAAATGCATGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAGTTTGCAGCATTTCATGTACTCTCGCTTGAGGGTGAGAAGGGATTGAATGTACTAGAACTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGACTTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATGCCAAGCTTTTTGAAAGAATAGCTCCATCAACATATTGTGTACGTGAGGCATTTAGAAAGAATCCTACTGACGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAGGATGCTGAAGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAATTGATGAGGATCCTGAAGTTGATGATTTGCTAAATCCGTCAAGTGCTAACAAAACATCTGAACAATGTGATGATTTCTCATCAAATGGAAAAGAAAATTTGGTACATGATGTTGAACTTCAAGGTGAGTTTGATAAGGATGTACCTTGTTTTCCTGAGAGTGGTTCCAAGAATGCTGATGCTCCAATTGCTGTAACTGAACAACCTGGTGCTTGTGAAGACCTGAATGTTGGAAATCTTGGTGGAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCAAGGGCTTGCAGAAGGAGAATATTCCGATCTTAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTAGTTGGTGTGGCAAATGAAGGAAGCTCAATCCGTCTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTAGATAAAGTTCGCCTAAAAGATGATACTTTCAGTAAATCTGATTTTCCATCTATCAATGGGAATAAAGTTGAAATGCAATACTCTTCTCCTGTCTTGGAGGGCAAGCAAAGCCCATTGCTTGGCCTTAATATCGGCAACAATAATAATGATGTGCCCTCTCCCAGCATTGCAGAAAATCAAAAAGCAGCTTCTGGTGCACAGAGCCTGTCTATTGAAAAGCACTCTTCAGTTCAAGATCTCTGCACTGGTCCAGATAACCCTCAGACTCAGTCATTTGTACATTCAAAAAGGTCACGCTCTCAGTGGAAATCTTATATTTCCCACATGGCTGAGGAGATGTATGTGTACAGATCCTTACCCCTTGGGCAAGATCGCAGACGTAACCGTTATTGGCAATTTGTTGCATCTGCTTCCTCCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAATATCTTGATGGCAATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGTGCTTCTGAATTCACTTGATTCACGTGGGACCAGGGAATCTCATTTGCATCTAATGTTGCAAAAGGTTCAGAGTTCCTTTAAGGAAAATGTTCGTAAGAATACACAATGTTCCAAAATTGGAAGCATAGGTGAAACATGTGTTAAAAATGAAGCTGATGAAACAGATTCCAGTCCTGATCGGCATACTGGGTCTGACAGTCCTAGCAGTACCCTATGTGGCTTGAACTCTGACACCTCAGAAACTTCATCATCCTTCAAAATCGAGCTTGGGAAAAGTGAGAGTGACAAGAAATCTGCCTTGAGAAGGTATCAAGATTTTCAAAAATGGACGTGGAAGGAATGTTATAACTCATCAATATTGTGTGCAATGAAATATGGGAAGAAGAGATGCAAACCTCAGGTTGTCATCTGTGATATCTGTCTCAACCCTTATTTCTGTGAAGACTCCCATTGCAGTGGTTGCCACCGGACATTTCCCTCAAATATTGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGACAAATCATCGAAAGCTATTGGTATTTTGGATTCTGCTTTTCCCTTACGGACAAGAATGCTTAAGGCCATGCTAGCGTTTGTTGAGGTATATGTTCCACCTGAAGCCTTTACATCAAATTGGACAGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGTGCAAATCATCTTCTGTTGAGGAACTGCTAGAGATATTGACCCTACTTGAGAGAGCATTGAAGCGAGACTTTTTATCATCAACCTTCTCTACAACGGGGGAACAGTTGAGGTTGAACAGAATGTCAGAGAGTGTTGCACAAACTTCTACTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACCACTTCAGCTGTGTGTCTCAGACTTTTGGAGTTTGATGCATCCATTGTCTATGTACCACATGAAAAACCTGAACCTTGTGAGGAGAAAGAAGATAGGATATACATAAAGCTTCCTTCAAGATATAATCCTTCTAAATCTAGTAAAGTGGCGGAAGCAGCAAACTTGGACCGGGACGAATACATGAAAGTTAAATCTACTTCTGTGAAAATTGTGCAAAGCAACAATAAACAAGGACGAGGGAGTCGTGATAAAGGACGGGGTAAAAAGCTATCTAAATCCAAACAAAATGCTGGCGGCCGGCGTAGTGCTAAGGTTACTGGGAGTACAAGTCAAAGGATAAAACAACAGGGAGGGGGATCACAAGGACAAGCTGGTGGACGTGGTCGCCGAACAGTTAGGAAAAGAAGAGTGGGGAAGAAGGCTGTTGAAGATTTGTTGGTGGGCCAAAGGGGTGCCACTCATAACTCCAGCATTGGTAGAGAATCATTGAGAAGCTTGGATGATGACTGGGATGATGAAAAGACAAGTCCCACGACTCCCATCCACATGGGGGCTGCTAACATTAGTAACAGCACCGAAGAGGCTGAATCTGATGACAATGTCCAAGCAATGGAATCCGATGATAATGTCCAAGCAGTGGAATCCGATGACAATGGCCAAGCTGTGGAATATGATCAAGGAAACTGGGAAATAGGTTTTAATGGTGCCTCCAGCAGATGGAGTAGGGATTTGGTTGGAATGAGTGATGACGATGTGGAAGCTTCTGAAGAAGATGAATACAACAATGGCAATGACATTGGCATTGAAAACAATGTAGAGGAGGATTCAGAGGCAGATGCTATGAGTGAGGAGGAGGGTTCAGATGGTATTGGAAACAGAATTGTAAATGAAGAAAGCTCAGACTCGGATGTCTCTGAAGATTCTTCTGATTAG 5163 0.4269 MEGEGCSDGENNQKRGGTDDDSNDVQINNNNINGSSSKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKKELPSKKLLRKVPAEPLPDSPRDDPRLALELANEYGSGSGSGSSPYARVEPLNVVRGLPGYYESSQSKLELRAIACVEKQLGEPLREDGPILGIEFDQLPPDAFGAPIAAVTEQKKLPSFAYDSKIYERHDARTNKAMVARTFRDNQFLPNKSGIRSDASGQFSQSHLHDPMEGSVRNPPFAHGNEHLPRTHATKGHSSRVRLLSQQDKQLIPYQSPSRDDDVAPERELYPNIANVGKNSHFTDHQIVGTENHAIPSAQVLHNNASRSEKKRKSDDAQDAEAHEMKIRKELEKQDNLRRKAERMRQREELRKEREVERRKAALEKATARRMAKESMELIEDEQLEMMELAASSKGFSSIIHLDFDTLQHLESFRDSLSVFPPKSVKLRKPFAIKPWINSENNVGNLLMVWRFLIDFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGTNQYGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSSGYGPQLKKRSISWTYANNKDEGRSCEDVISTLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGEKGLNVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYCVREAFRKNPTDAESILSEARKKIQIFENGFLAGEDAEDVEREESESDEIDEDPEVDDLLNPSSANKTSEQCDDFSSNGKENLVHDVELQGEFDKDVPCFPESGSKNADAPIAVTEQPGACEDLNVGNLGGDNMEIDESKPGESWVQGLAEGEYSDLSVEERLNALVVLVGVANEGSSIRLVLEDRLEAANALKKQMWAEAQLDKVRLKDDTFSKSDFPSINGNKVEMQYSSPVLEGKQSPLLGLNIGNNNNDVPSPSIAENQKAASGAQSLSIEKHSSVQDLCTGPDNPQTQSFVHSKRSRSQWKSYISHMAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEYLDGNWRLIDTEEAFDVLLNSLDSRGTRESHLHLMLQKVQSSFKENVRKNTQCSKIGSIGETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDTSETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSILCAMKYGKKRCKPQVVICDICLNPYFCEDSHCSGCHRTFPSNIGFNFSKHAFQCGDKSSKAIGILDSAFPLRTRMLKAMLAFVEVYVPPEAFTSNWTEDIRRHWSVKLCKSSSVEELLEILTLLERALKRDFLSSTFSTTGEQLRLNRMSESVAQTSTDPESVAVLPWVPLTTSAVCLRLLEFDASIVYVPHEKPEPCEEKEDRIYIKLPSRYNPSKSSKVAEAANLDRDEYMKVKSTSVKIVQSNNKQGRGSRDKGRGKKLSKSKQNAGGRRSAKVTGSTSQRIKQQGGGSQGQAGGRGRRTVRKRRVGKKAVEDLLVGQRGATHNSSIGRESLRSLDDDWDDEKTSPTTPIHMGAANISNSTEEAESDDNVQAMESDDNVQAVESDDNGQAVEYDQGNWEIGFNGASSRWSRDLVGMSDDDVEASEEDEYNNGNDIGIENNVEEDSEADAMSEEEGSDGIGNRIVNEESSDSDVSEDSSD 1720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1854 1720 MobiDBLite consensus disorder prediction 22 54 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 1 57 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 1590 1607 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 368 385 - -
Aed10g1854 1720 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 15 409 IPR044977 GO:0006357
Aed10g1854 1720 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 403 1720 IPR044977 GO:0006357
Aed10g1854 1720 PANTHER HOMEOBOX DOMAIN PROTEIN 403 1720 - -
Aed10g1854 1720 Pfam Homeodomain 48 104 IPR001356 GO:0003677
Aed10g1854 1720 SMART HOX_1 47 109 IPR001356 GO:0003677
Aed10g1854 1720 ProSiteProfiles HARE-type HTH domain profile. 685 754 IPR007759 GO:0006355
Aed10g1854 1720 MobiDBLite consensus disorder prediction 786 807 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 810 826 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 1680 1694 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 7 21 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 1479 1607 - -
Aed10g1854 1720 PANTHER HOMEOBOX DOMAIN PROTEIN 15 409 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 252 327 - -
Aed10g1854 1720 CDD homeodomain 50 105 IPR001356 GO:0003677
Aed10g1854 1720 ProSiteProfiles DDT domain profile. 503 562 IPR018501 -
Aed10g1854 1720 Gene3D - 32 106 - -
Aed10g1854 1720 Coils Coil 383 430 - -
Aed10g1854 1720 Pfam DDT domain 505 559 IPR018501 -
Aed10g1854 1720 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Aed10g1854 1720 SUPERFAMILY Homeodomain-like 36 104 IPR009057 -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 301 317 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 1169 1200 - -
Aed10g1854 1720 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 891 930 IPR028942 -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 1180 1200 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 252 274 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 1506 1532 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 998 1021 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 784 826 - -
Aed10g1854 1720 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1069 1141 IPR028941 -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 356 385 - -
Aed10g1854 1720 SMART testlast3 503 562 IPR018501 -
Aed10g1854 1720 Pfam HB1, ASXL, restriction endonuclease HTH domain 685 753 IPR007759 GO:0006355
Aed10g1854 1720 MobiDBLite consensus disorder prediction 1645 1720 - -
Aed10g1854 1720 MobiDBLite consensus disorder prediction 1571 1586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1854 Aed-Chr10 22946735 22957782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1854 45 1447 Homeobox Transcription Factor Family AT5G44180 46.402 0.0 1169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aed10g1854 WSD 8.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1854 - - gmx:100784945 2763.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1854 10 22946735 22957782 Aed9g0529 9 3643690 3654263 PCT