Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1852 ATGACAAACCCAAACCCATTCTCCATCTTAGTAGTTGTTTACGCTCTCTTCTCACTACTAGCAACAACAACAACGTTGGTGTCGTGTCTGAACCAAGAAGGCCTATACCTCTACCAGCTGAAACTCTCTCTCGACGACCCCGACTCAAGACTCTCCTCATGGAACTCGCGAGACGCCACTCCCTGCACCTGGTACGGCGTCACCTGCGACGCCGCCACCAACACCACCGTCACACAACTGGACCTGTCCGACACCAACATCGGAGGCCCATTCCTCGCAAACATCCTCTGCCGCCTCCCCAACCTCGTTTCCGTCAACATGTTCAACAACTCCATCAACCAAACCCTACCCCACGACATAACCCTCTGCAACAACCTCGTCCACCTCGACCTCTCCCAGAATCTCCTCACCGGCGAACTCCCCACCACGCTCCCGCTCCTCCCCAACCTCCGCCACCTCGACCTTACCGGCAACAACTTCTCCGGCGCTATCCCCGACTCCTTCGGAACCTTCCAGAGCCTTGAAGTCCTCTCTCTGGTTTCGAATCTTCTAGAAGGCACCATCCCCGCCTCTTTGGGTAACGTCACTACTTTAAAAATGCTTAATTTGTCTTACAATCCGTTTTTCCCGGGTCGGATCCCGCCGGAGATCGGAAACCTCACCAACCTAGAAGTCCTCTGGCTGACCCAATGCAACCTCGTCGGCGTTATTCCAACCTCCCTCGGGAGGTTGGCCAAGCTCCGGGATTTGGACCTTGCGCTGAACGACCTCTACGGTTCCATCCCGAGTTCGCTCACTGAGTTGACCAGCTTGACTCAGATCGAGTTGTACAACAACTCGCTCTCCGGAGAGCTTCCTCGCGGAATGGGGAACCTTACCAACTTGAGGCTTCTTGATGCGTCGATGAATCACTTAACCGGAAGGATTCCGGAGGAACTCTGTTCTCTGCCGTTGGAAAGTCTTAACCTTTATGAAAATCGGTTCGAGGGGGAGTTGCCGGCGAGCATTGCAAATTCGCCGAATTTGTACGAGCTGAGGCTTTTCGGGAACCGACTCACCGGAAAGTTACCTGAGAATCTCGGGAAGTATTCGCCGCTCCGGTGGCTCGACGTCTCGAGCAACCAGTTCTGGGGGCCGATTCCGGCGACGCTCTGTGATAAAGGTGTTCTGGAGGAGCTTCTGGTGATTTACAATCTCTTCTCCGGAGAGATTCCAGCGAGTCTCGGCACGTGCCAGAGTTTAACACGTGTGAGGCTTGGCTTCAACAGGCTCTCCGGCGAGGTTCCGGCGGGGATCTGGGGGTTGCCGCACGTGTACCTTCTCGAACTCGTCGACAACTCGTTCTCCGGTTCCATCGCGAGGACCATCGCCGGCGCGGCGAACCTCTCGCTGCTAATTCTTTCGAAGAACAACTTCACGGGAACGGTTCCTGACGAGGTTGGGTGGTTGGAGAATCTCGTGGAGTTTTCCGCGAGCGATAACAAGTTCACTGGTTCGCTTCCTGACAGCATCGTGAATCTCGGGCAGCTCGGGATTCTCGATTTTCACAACAATAAACTCTCTGGAGAGCTTCCAAAGGGGATTCGTTCTTGGAAGAAGCTCAACGATATGAATTTGGCGAACAACGAGATTAATGGGAAGATCCCCGACGAGATTGGGGGTTTGTCAGTGCTGAACTTTCTAGATCTTTCTAGAAACCGCTTTTCGGGGAATGTCCCTCGCGGCTTGCAGAATCTGAAGCTTAATCAGCTCAATTTGTCTTACAATCGTTTGTCTGGTGAATTGCCTCCTCTGTTAGCTAAGGATATGTATAGGTCTAGCTTTCTAGGGAACCCCGGGTTGTGTGGGGATTTGAAGGGCTTGTGTGATGGTAGAGCTCAGGAGAAGAGTGTGGGTTATGTGTGGCTGCTGCGAGCGATTTTCGTCATCGCCACTCTGGTTTTCTTTGTTGGTGTTGTTTGGTTTTACTTCAGGTACAAGAATTTCCAGGACGCCAAGAGGGCGTTCGACAAGTCGAAGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTAGCGAAGATGAGATTTTGAATTGTCTCGACGAGGATAATGTGATCGGGAGCGGGTCGTCCGGGAAGGTCTACAAGGTTGTTCTAAGCAGCGGTGAGGTCGTGGCGGTGAAGAAGATATGGGGAGGGGTTAGGAAGGAGGTGGAGAGTGGGGATGTTGAGAAGGAATATGCATACACGCTTAGAGTGAACGAGAAGAGTGACATATACAGTTTCGGGGTCGTCATACTCGAGTTGGTCACCGGAAAACGCCCGGTGGACCCGGAGTTTGGGGAGAAAGACTTGGTGAAGTGGGTGTGCACAACCTTGGACCAGAAAGGGGTGGACCATTTAATAGACTCAAGGCTTGATACTTGTTCCAAAGAAGAAATTTGCAAGGTGTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCCATCAACCGGCCTTCAATGAGAAGAGTGGTGAAGATGTTGCAAGAGGTGGCCACAGAGAACCAAACCAAGCCTGCAAAGCAGAAAGATGGCAAGTTATCCCCTTATTACTATGACGATGCCTCAGATCATGGAAGTGTTGTTTAA 2610 0.5207 MTNPNPFSILVVVYALFSLLATTTTLVSCLNQEGLYLYQLKLSLDDPDSRLSSWNSRDATPCTWYGVTCDAATNTTVTQLDLSDTNIGGPFLANILCRLPNLVSVNMFNNSINQTLPHDITLCNNLVHLDLSQNLLTGELPTTLPLLPNLRHLDLTGNNFSGAIPDSFGTFQSLEVLSLVSNLLEGTIPASLGNVTTLKMLNLSYNPFFPGRIPPEIGNLTNLEVLWLTQCNLVGVIPTSLGRLAKLRDLDLALNDLYGSIPSSLTELTSLTQIELYNNSLSGELPRGMGNLTNLRLLDASMNHLTGRIPEELCSLPLESLNLYENRFEGELPASIANSPNLYELRLFGNRLTGKLPENLGKYSPLRWLDVSSNQFWGPIPATLCDKGVLEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAANLSLLILSKNNFTGTVPDEVGWLENLVEFSASDNKFTGSLPDSIVNLGQLGILDFHNNKLSGELPKGIRSWKKLNDMNLANNEINGKIPDEIGGLSVLNFLDLSRNRFSGNVPRGLQNLKLNQLNLSYNRLSGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRAQEKSVGYVWLLRAIFVIATLVFFVGVVWFYFRYKNFQDAKRAFDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKEYAYTLRVNEKSDIYSFGVVILELVTGKRPVDPEFGEKDLVKWVCTTLDQKGVDHLIDSRLDTCSKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVATENQTKPAKQKDGKLSPYYYDDASDHGSVV 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1852 869 Pfam Leucine rich repeat 148 207 IPR001611 GO:0005515
Aed10g1852 869 SUPERFAMILY RNI-like 356 596 - -
Aed10g1852 869 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 735 - -
Aed10g1852 869 SUPERFAMILY RNI-like 80 427 - -
Aed10g1852 869 MobiDBLite consensus disorder prediction 844 858 - -
Aed10g1852 869 Gene3D Ribonuclease Inhibitor 182 286 IPR032675 -
Aed10g1852 869 SUPERFAMILY Protein kinase-like (PK-like) 739 842 IPR011009 -
Aed10g1852 869 Gene3D Ribonuclease Inhibitor 29 181 IPR032675 -
Aed10g1852 869 MobiDBLite consensus disorder prediction 840 869 - -
Aed10g1852 869 Gene3D Transferase(Phosphotransferase) domain 1 734 862 - -
Aed10g1852 869 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 734 850 - -
Aed10g1852 869 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Aed10g1852 869 SMART LRR_typ_2 220 244 IPR003591 -
Aed10g1852 869 SMART LRR_typ_2 147 170 IPR003591 -
Aed10g1852 869 SMART LRR_typ_2 555 578 IPR003591 -
Aed10g1852 869 SMART LRR_typ_2 268 291 IPR003591 -
Aed10g1852 869 SMART LRR_typ_2 292 316 IPR003591 -
Aed10g1852 869 SMART LRR_typ_2 507 531 IPR003591 -
Aed10g1852 869 SMART LRR_typ_2 99 123 IPR003591 -
Aed10g1852 869 Gene3D Ribonuclease Inhibitor 287 390 IPR032675 -
Aed10g1852 869 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524
Aed10g1852 869 PANTHER LRR RECEPTOR-LIKE KINASE 7 735 - -
Aed10g1852 869 PANTHER LRR RECEPTOR-LIKE KINASE 734 850 - -
Aed10g1852 869 Gene3D Ribonuclease Inhibitor 391 622 IPR032675 -
Aed10g1852 869 SUPERFAMILY Protein kinase-like (PK-like) 688 729 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1852 Aed-Chr10 22916794 22920614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1852 734 869 Receptor kinase-like Gene Family AT1G28440 70.504 3.07e-57 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aed10g1852 LRR_8 8e-10 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1852 - - gmx:100819887 1294.26