Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1845 ATGACTGGTCTCATCGATCTCAACAACGCCACGGAGGACGATGAAACGCCATCGTCTGGCTCTTCATCCTCTTCGACCACCGTGTGCCTCGAGCTCTGGCACGCGTGCGCGGGTCCAATGATTTCCTTGCCAAAGAAAGGGAGCGTTGTCGTGTACTTCCCACAGGGACACTTGGAGCAACACCTTCACGATTTTCCGCTCCCTGCCTCAGCCAACATCCCCTCCCATCTCTTCTGTCGCGTTCTTGATGTCAAGCTTCACGCTGAGGAAGGGAGCGATGAAGTGTATTGCCAGGTGGTGCTGGTTCCCGAAAGTGAGCAAGTGCAGCAGAAGTTGCGAGAGGGGGAAATTGATGCTGATGGTGAAGAGGAGGATGCTGAAGCTGTGATGAAGTCGACTACTCCTCACATGTTCTGCAAGACTTTGACTGCTTCTGATACCAGCACTCATGGTGGATTCTCGGTGCCTCGTCGCGCCGCGGAGGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGGCCTTCACAGGAGCTTGTGGCAAAGGATCTGCATGGCCAGGAATGGAGGTTTCGACATATTTACAGGGGGCAGCCACGAAGACACTTGCTTACTACCGGTTGGAGTGCGTTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGATGATGGAGAACTGAGATTGGGAATTCGTAGGGCTGCTCAATTGAAAAATGGCAGTACCTTTTCAGCTCTTTCTGGCCAGCAATTGAATCTTGGCAGTCTTATGGATGTGGTTAATGCTTTGTCTGCAAGATGTGCCTTTAGCATTCACTATAATCCGAGGGTCAGTTCATCTGAGTTCATCATACCTATCAACAGATTCTTAAAGAGCCTTGATTATTCTTATTCTGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTCACAGGATTAATTGTTGGAATTGCTGATGTGGATCCTGTTAGATGGCCTGGATCTAAATGGAGATGCCTAATGGTAAGGTGGGATGACTTAGAAGCCACAAGGCTTAATAGGGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGCTTCTACTGCAAATAACTTGATGTCAGCTGGTTTGAAGAGGACCAAGATTGGATTGTCTTCAGCGAAGCTAGAATTTCCAGTTCCCAATGCAATTGGAACATCAGACTTTGGGGAATCACTTAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATACTACTTTTGATAGTATTAATGCTCAGAGTCACCAACTATCTGATTTGAGGAGGTGCTATCCTGGCTCAAACTGTCCTAGGATTGCTGCAACAGGAAATAGCATTGGAATTCCACGAGTGAGTTCCAATATTTCCAGCAATGGCATAGGCTTTAGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCCTGTCTGTTGATGAGGCTTGTGGAAATGGTCGCTTTGGACATTTTGATGGTTACCAGGCGCTGAGATCCAGAAATGGATGGCCTTCCCACATGAGTAACAATTCCACACATTTGCATCCTCCTGTTCCACCTGGGCAAGTTTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTTCAAACTCAGATTATAACAACAAAATTAGTCAGGTGATGGGAGATAAAGTCCATCAACGAGTTTCATATGCTTCTGAAGTAAAAGGTGGAAAATTTGTATCAACCCCCTATGAGCCTCTTCTCCGTGGACTAGCTCAGGAAGGCACAAATTCTTTTGGTCTTCCAAACTTTCATAATCAGTTGGATAGTTCACATTCACATGATTCAATTTCAGTACTTAGAGCTAGTCAAGAGTTGGTTCCCTCGTGTAAAAGTAGATGCAGAGTCTTTGGTTTTTCATTAGCTGAGGGTGCTCCCGTTACAAATGAAGAGCCTGCTGACTCATCTGCAGTTGCATGTTCTGGACCTTCCTTTACAAGACATGTTGAAGATGATTTCCACCCAGGGCATTCACTTAGGAGCAAGGCAGTGGCAAGTTATTGCCCCAAAGGTGTGCTGCAATATTGA 2130 0.462 MTGLIDLNNATEDDETPSSGSSSSSTTVCLELWHACAGPMISLPKKGSVVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHAEEGSDEVYCQVVLVPESEQVQQKLREGEIDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKNGSTFSALSGQQLNLGSLMDVVNALSARCAFSIHYNPRVSSSEFIIPINRFLKSLDYSYSAGMRFRMRFETEDAAERRFTGLIVGIADVDPVRWPGSKWRCLMVRWDDLEATRLNRVSPWEIEPSGSASTANNLMSAGLKRTKIGLSSAKLEFPVPNAIGTSDFGESLRFQKVLQGQEMLGVNTTFDSINAQSHQLSDLRRCYPGSNCPRIAATGNSIGIPRVSSNISSNGIGFSESFRFQKVLQGQEILPSQPYGRALSVDEACGNGRFGHFDGYQALRSRNGWPSHMSNNSTHLHPPVPPGQVSSPSSVLMFQQAVSNSDYNNKISQVMGDKVHQRVSYASEVKGGKFVSTPYEPLLRGLAQEGTNSFGLPNFHNQLDSSHSHDSISVLRASQELVPSCKSRCRVFGFSLAEGAPVTNEEPADSSAVACSGPSFTRHVEDDFHPGHSLRSKAVASYCPKGVLQY 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1845 709 Gene3D - 136 240 IPR015300 -
Aed10g1845 709 ProSiteProfiles B3 DNA-binding domain profile. 138 240 IPR003340 GO:0003677
Aed10g1845 709 Pfam Auxin response factor 265 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed10g1845 709 Gene3D - 301 375 - -
Aed10g1845 709 SMART B3_2 138 240 IPR003340 GO:0003677
Aed10g1845 709 Pfam B3 DNA binding domain 138 239 IPR003340 GO:0003677
Aed10g1845 709 SUPERFAMILY DNA-binding pseudobarrel domain 131 246 IPR015300 -
Aed10g1845 709 CDD B3_DNA 136 238 IPR003340 GO:0003677
Aed10g1845 709 MobiDBLite consensus disorder prediction 1 23 - -
Aed10g1845 709 PANTHER AUXIN RESPONSE FACTOR 16 709 - -
Aed10g1845 709 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 709 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1845 Aed-Chr10 22820075 22826108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1845 137 495 B3 DNA Binding Superfamily AT2G33860 58.564 5.61e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed10g1845 B3 1.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1845 K14486 - gmx:100808119 1288.86