Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1842 ATGGCTTTCTGTAGTAATGGCAGTGAAGAGAGCGAACTCTACCACGCTCAAATCCATTTGTACAGACATGTTTACAAGTTTGTAAGCTCCATGGCTCTCAAGTCCGCTATGGAGCTAGGCATAGCAGACGTTATCCACAGTCACGGAAAACCCATGACTATTTCAGAGTTATCCTCTGCTCTCAAGTTACACCCTTCGAAAGTGAGTGTTCTTCACCGCTTTCTGCGCCTTCTAACACACAACGGCTTCTTCACAAAAATAACGGTGCCGTCACAGAACGGTACAGAAGAAACGGCGTATGGTCTGACTCCTCCTTCGAAGCTTCTAATCAGAGGAAAGTCAACGTGTTTGGCTCCTATTGTCAAAGGAGCGCTTCACTCTAGCTCTCTTGACATGTGGCATTCCTCGAAGAAATGGTTCAGTGAGGATAAGGAACTCACACTTTATGAGAGTGCAACTGGTGAGAGCTTCTGGGACTTTCTCAACAAAACCACTGAATCTGACACACTTGACATGTTTCAAGATGCTATGGCTTCAGATTCTAACATGTTCAAACTTGCACTCAAAGAATGCAAGCATGTGTTCGAGGGGTTGGGTTCACTCGTCGATGTGGGAGGTGGGACTGGTGGAGTCTCAAGGCTCATCAATGAAGCTTTTCCTCACTTGAAATGCACAGTGTTTGACCAACCAAAGGTTGTGGCTAATTTAACTGGAAACGAAAATTTGAACTTTGTTGGTGGTGATATGTTCAACTCCATCCCATCTGCCGATGCAGTTTTGCTCAAGTGGGTTTTGCATGATTGGAACGATGAGCTCTCGGTGAAGATATTGAAGAACTGCAAAGAAGCTATTTCAGGGAAAAGGAAAGAAGGAAAAGTGATAATCATAGACGTAGCGATTGATGAAGCTGGTGATGATCGTGAAATAACTGAGTTGAAGTTGGACTATGACTTGGTTATGTTGACTATGTTCAATGGAAAAGAAAGAGAAAAGAAAGAGTGGGAGAAACTCATATACGAAGCAGGCTTCAGCAGCTACAAGATTAATCCTATATGTGGATTCAAATCTCTTATCGAAGTCTATCCTTAA 1089 0.4325 MAFCSNGSEESELYHAQIHLYRHVYKFVSSMALKSAMELGIADVIHSHGKPMTISELSSALKLHPSKVSVLHRFLRLLTHNGFFTKITVPSQNGTEETAYGLTPPSKLLIRGKSTCLAPIVKGALHSSSLDMWHSSKKWFSEDKELTLYESATGESFWDFLNKTTESDTLDMFQDAMASDSNMFKLALKECKHVFEGLGSLVDVGGGTGGVSRLINEAFPHLKCTVFDQPKVVANLTGNENLNFVGGDMFNSIPSADAVLLKWVLHDWNDELSVKILKNCKEAISGKRKEGKVIIIDVAIDEAGDDREITELKLDYDLVMLTMFNGKEREKKEWEKLIYEAGFSSYKINPICGFKSLIEVYP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1842 362 Gene3D Vaccinia Virus protein VP39 110 362 IPR029063 -
Aed10g1842 362 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Aed10g1842 362 Pfam O-methyltransferase domain 133 344 IPR001077 GO:0008171
Aed10g1842 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 362 IPR016461 GO:0008168
Aed10g1842 362 PANTHER O-METHYLTRANSFERASE 5 362 IPR016461 GO:0008168
Aed10g1842 362 SUPERFAMILY "Winged helix" DNA-binding domain 10 113 IPR036390 -
Aed10g1842 362 PANTHER ISOFLAVONE 4'-O-METHYLTRANSFERASE 5 362 - -
Aed10g1842 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 361 IPR029063 -
Aed10g1842 362 PIRSF O-mtase 2 362 IPR016461 GO:0008168
Aed10g1842 362 Gene3D - 2 109 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1842 Aed-Chr10 22791747 22794329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1842 28 348 Monolignol Biosynthesis Gene Families AT5G54160 33.333 2.61e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1842 K22588 - gmx:100807589 643.269