Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed10g1807 | ATGGAATTCCCGAAGAAGCGCAAAACCGAAGAGAACGGCGACGCCGATTCTCCGCCGCCGCAATCCGCCGAAGAAGCCCCTCTCTCCATCGTCCCCGCCGCCGCGGCCCCTCTCTCCGCCGAGGACATCCGCAAGATCCTGCAACCGTTCTCCCAGGAGCAGCTCCTGGAGCTCCTCCAATCGGCCTCGCTCCGCCACCCCGACGTCCTCGACGCCGTGCGCGGCGTCGCGGACCGCGACAACACCCTCCGGAAGCTCTTCGTCCGCGGCCTCGCCGGCGAGACCACGACGGAGACGCTGCGCGGCGTATTCTCGGCGTACGGCGAGCTGGACGAGGCCATCGTGATCATGGACAAGGCCACCGGGAGGTCCAAGGGCTACGGCTTCGTCGTGTTCCGCCACGTGGACGGCGCGATTCTCGCCCTCAAAGACCCCAGCAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCTGCCGCAGGAGGTCCCGGCGGTGGCGACGTGTCGCTGAGGAAGGTCTTCGTCGGGAACGTCCCCTTCGAGATTTCCTCGGAGAGGCTCCTCGACGAGTTCCTCAGGTTCGGAGAAGTCGAGGAAGGGCCTCTAGGGTTCGACAAATCAAGTGGCAAAAGCAGAGGCTTTGCCTTCTTCGTTTACAAGACCGAGGAAGGTGCAAGGGCTTCGCTGATGGGTGGGCCGGTTTCCGGCGACTATGGTGCGAGGGTGCCTCCCAACTCGGGTGGGGGATACCCTGATGGCTCGCAGTATGGCTACCCTCCTTCGTCGGGGCATCCGCCGCAGACGCAGGTTCCAATGGTGAGACCTCCTCCTGGTGGAATGTGTTTCATTCAGGTTTGTGATGGCTTCTTGGACGCTAATGCTTTAAATGGTTGCTTTCGTGCATGCAGACAATGA | 918 | 0.6275 | MEFPKKRKTEENGDADSPPPQSAEEAPLSIVPAAAAPLSAEDIRKILQPFSQEQLLELLQSASLRHPDVLDAVRGVADRDNTLRKLFVRGLAGETTTETLRGVFSAYGELDEAIVIMDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGGDVSLRKVFVGNVPFEISSERLLDEFLRFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLMGGPVSGDYGARVPPNSGGGYPDGSQYGYPPSSGHPPQTQVPMVRPPPGGMCFIQVCDGFLDANALNGCFRACRQ | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed10g1807 | 305 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 84 | 161 | IPR000504 | GO:0003723 | |
Aed10g1807 | 305 | Gene3D | - | 159 | 233 | IPR012677 | - | |
Aed10g1807 | 305 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 172 | 237 | IPR000504 | GO:0003723 | |
Aed10g1807 | 305 | PANTHER | GEO13361P1-RELATED | 1 | 231 | - | - | |
Aed10g1807 | 305 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 174 | 228 | IPR000504 | GO:0003723 | |
Aed10g1807 | 305 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 86 | 152 | IPR000504 | GO:0003723 | |
Aed10g1807 | 305 | SUPERFAMILY | RNA-binding domain, RBD | 83 | 230 | IPR035979 | GO:0003676 | |
Aed10g1807 | 305 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Aed10g1807 | 305 | MobiDBLite | consensus disorder prediction | 239 | 273 | - | - | |
Aed10g1807 | 305 | CDD | RRM_RBM24_RBM38_like | 84 | 158 | - | - | |
Aed10g1807 | 305 | Gene3D | - | 75 | 158 | IPR012677 | - | |
Aed10g1807 | 305 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 1 | 231 | - | - | |
Aed10g1807 | 305 | SMART | rrm1_1 | 173 | 246 | IPR000504 | GO:0003723 | |
Aed10g1807 | 305 | SMART | rrm1_1 | 85 | 157 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed10g1807 | Aed-Chr10 | 22589615 | 22594535 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed10g1807 | 168 | 230 | C2H2 Transcription Factor Family | AT2G19380 | 34.921 | 2.31e-08 | 53.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed10g1807 | K12741 | - | gmx:100816590 | 398.282 |