Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1807 ATGGAATTCCCGAAGAAGCGCAAAACCGAAGAGAACGGCGACGCCGATTCTCCGCCGCCGCAATCCGCCGAAGAAGCCCCTCTCTCCATCGTCCCCGCCGCCGCGGCCCCTCTCTCCGCCGAGGACATCCGCAAGATCCTGCAACCGTTCTCCCAGGAGCAGCTCCTGGAGCTCCTCCAATCGGCCTCGCTCCGCCACCCCGACGTCCTCGACGCCGTGCGCGGCGTCGCGGACCGCGACAACACCCTCCGGAAGCTCTTCGTCCGCGGCCTCGCCGGCGAGACCACGACGGAGACGCTGCGCGGCGTATTCTCGGCGTACGGCGAGCTGGACGAGGCCATCGTGATCATGGACAAGGCCACCGGGAGGTCCAAGGGCTACGGCTTCGTCGTGTTCCGCCACGTGGACGGCGCGATTCTCGCCCTCAAAGACCCCAGCAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCTGCCGCAGGAGGTCCCGGCGGTGGCGACGTGTCGCTGAGGAAGGTCTTCGTCGGGAACGTCCCCTTCGAGATTTCCTCGGAGAGGCTCCTCGACGAGTTCCTCAGGTTCGGAGAAGTCGAGGAAGGGCCTCTAGGGTTCGACAAATCAAGTGGCAAAAGCAGAGGCTTTGCCTTCTTCGTTTACAAGACCGAGGAAGGTGCAAGGGCTTCGCTGATGGGTGGGCCGGTTTCCGGCGACTATGGTGCGAGGGTGCCTCCCAACTCGGGTGGGGGATACCCTGATGGCTCGCAGTATGGCTACCCTCCTTCGTCGGGGCATCCGCCGCAGACGCAGGTTCCAATGGTGAGACCTCCTCCTGGTGGAATGTGTTTCATTCAGGTTTGTGATGGCTTCTTGGACGCTAATGCTTTAAATGGTTGCTTTCGTGCATGCAGACAATGA 918 0.6275 MEFPKKRKTEENGDADSPPPQSAEEAPLSIVPAAAAPLSAEDIRKILQPFSQEQLLELLQSASLRHPDVLDAVRGVADRDNTLRKLFVRGLAGETTTETLRGVFSAYGELDEAIVIMDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGGDVSLRKVFVGNVPFEISSERLLDEFLRFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLMGGPVSGDYGARVPPNSGGGYPDGSQYGYPPSSGHPPQTQVPMVRPPPGGMCFIQVCDGFLDANALNGCFRACRQ 305
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1807 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 161 IPR000504 GO:0003723
Aed10g1807 305 Gene3D - 159 233 IPR012677 -
Aed10g1807 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 237 IPR000504 GO:0003723
Aed10g1807 305 PANTHER GEO13361P1-RELATED 1 231 - -
Aed10g1807 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 228 IPR000504 GO:0003723
Aed10g1807 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 152 IPR000504 GO:0003723
Aed10g1807 305 SUPERFAMILY RNA-binding domain, RBD 83 230 IPR035979 GO:0003676
Aed10g1807 305 MobiDBLite consensus disorder prediction 1 27 - -
Aed10g1807 305 MobiDBLite consensus disorder prediction 239 273 - -
Aed10g1807 305 CDD RRM_RBM24_RBM38_like 84 158 - -
Aed10g1807 305 Gene3D - 75 158 IPR012677 -
Aed10g1807 305 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 231 - -
Aed10g1807 305 SMART rrm1_1 173 246 IPR000504 GO:0003723
Aed10g1807 305 SMART rrm1_1 85 157 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed10g1807 Aed-Chr10 22589615 22594535 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1807 168 230 C2H2 Transcription Factor Family AT2G19380 34.921 2.31e-08 53.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1807 K12741 - gmx:100816590 398.282