Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1787 ATGATAGCAAGCTCCTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAACATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAAAAGATTGGTGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCGCCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGATTACATAGGATTCCTTCATAAACAAGTTAAGGGTATGGAGCCATGCAGCCTGAGGAGTAGAGGCTTATGTGTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAGACTACTACTTCACCTAAATTTGAGAAGGATGATGTCTCCCAATTCCATTGA 459 0.4096 MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMDYIGFLHKQVKGMEPCSLRSRGLCVVPVSFTIGVAESNGADIWAPIKTTTSPKFEKDDVSQFH 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1787 152 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Aed10g1787 152 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 108 IPR036638 GO:0046983
Aed10g1787 152 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 100 134 - -
Aed10g1787 152 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 13 100 - -
Aed10g1787 152 Gene3D - 43 111 IPR036638 GO:0046983
Aed10g1787 152 SMART finulus 52 101 IPR011598 GO:0046983
Aed10g1787 152 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Aed10g1787 152 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 100 - -
Aed10g1787 152 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1787 Aed-Chr10 22371543 22376595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1787 24 151 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 48.795 7.98e-46 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1787 - - gmx:100809747 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1787 10 22371543 22376595 Aed10g1787 10 22371543 22376595 ECH