Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1786 ATGGTGGACGACTTTATTGTCTGCATTGATCGGATTGTAGCCTCCACCACCTGTTTTGGATCAGTGGATCATGGAACACACTCTCATCATGTTTCCGACAATGCTGGAGAAGGCTGTTCCTCTTCTTCAAACAACGATGATGTTGTTGTTGAGTGCAGAATATGCCAGGAAGAAGATCAAGCACAAGCCATGGAGGCTCCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGTGTCCAAAGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAATCAGGCATTTTCACCAAATTATTCTCTTCCACCAGTCAAAAGCAATGCAATTATGGCGATTGATATAAGGCAAGAATGGGGGCATAATGCTGATCTCCATGTGGCTCTAGCTTCAGCAGAGCAGCAGTTGCTGCAAACTGAGTATGAAGATTATGCCATGTCACAAACCAGTAGCATTGCTTGCCTTCACTCCGTCACTCTCATTTTGTTGATGATTTTGCTTGTACGCCAAACTTTAATGGTCACAAAGAACTCTGTAACTGGGCAAGATGCATCAATAATCTTTAATTTTGAGATGTCACTCCTTCAATTTGCCGGTGTTCTTTTGCCATGCTATGCAATGGCGCGTTCCTGGTATGCTGTACAGAACCGGAGAAGAAGACAGGTATGGCTTTACATGATGCCATTGGAACATAGTTAA 714 0.4258 MVDDFIVCIDRIVASTTCFGSVDHGTHSHHVSDNAGEGCSSSSNNDDVVVECRICQEEDQAQAMEAPCSCNGTLKFAHRKCVQRWCNKKGNTICEICNQAFSPNYSLPPVKSNAIMAIDIRQEWGHNADLHVALASAEQQLLQTEYEDYAMSQTSSIACLHSVTLILLMILLVRQTLMVTKNSVTGQDASIIFNFEMSLLQFAGVLLPCYAMARSWYAVQNRRRRQVWLYMMPLEHS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1786 237 ProSiteProfiles Zinc finger RING-CH-type profile. 44 104 IPR011016 GO:0008270
Aed10g1786 237 Pfam Protein of unknown function (DUF3675) 103 216 IPR022143 -
Aed10g1786 237 PANTHER OS01G0894600 PROTEIN 1 226 - -
Aed10g1786 237 CDD RING_CH-C4HC3_MARCH 52 98 - -
Aed10g1786 237 SUPERFAMILY RING/U-box 50 101 - -
Aed10g1786 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 108 IPR013083 -
Aed10g1786 237 Pfam RING-variant domain 52 97 IPR011016 GO:0008270
Aed10g1786 237 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 226 IPR033275 -
Aed10g1786 237 SMART ringv_2 51 98 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1786 Aed-Chr10 22361783 22364189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1786 44 97 C3H Transcription Factor Family AT2G37950 39.344 2.07e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1786 - - gmx:100812120 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1786 10 22361783 22364189 Aed10g1786 10 22361783 22364189 ECH