Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1771 ATGGGTTCGGTTCCCGCAGAACTGAGCTTGGATTTGAGACCACCCTCCTTCGTCCCCAAAACCGTCGCTGATTTCCTCCGCCACCTCTCCTCCTCTTCCGGTAACAAGCTCGCCACCCTCCACGATTTCCTCGCCCGCCTCGAAGACGAGCTCCGCAAGATCGACGCCTTCAAACGCGAACTCCCCCTCTCCATGCTCCTCTTAAACGACGCAATCTCAGTTCTGAAGGCGGAGTCGCAGAAATGCAGGCCGCGCGATTCTCCGCCGGTGCTGGAGGAGTTCATTCCGTTGAAGAAAGAGCGTGATCAGAGCGAGGACGACGACAATGACGACGACGATGATGACAATAACAGCAACGAATGCAAAGATAAGAGGAATTGGATGAGTTCCGTTCAGCTCTGGAATAACAACACCACTGCTACTACCACTACTATTAACAACAATGCCTCTGATCGCAAACTACTTCTTAAATTACAAACAAAGAAAAGTGAAGAAGGGCAATCTGTGGTTGAGGATCCTTTTCAGACTTGCAGTAATAGAAATGGTGGTGGGAGAAGGGCGTTTATGCCATTTTCTAGGTACTCTTCTTCATCATCGTCTGTGCTGGTGACAGCAGTGGGACTAGGGGCTTCAACCAAAGAAGAGAAGGAAGATAGTGTTATTATGAATAGGCTTTCTCTTCTCACCACCCCTTCTTCTGTGAAAGAGGGGTGTGTCTCAAGGGGATCAAGGACCAGTTCCAACAGGGCTGTTTCTTCTTCTCCTCCTCCCACGGTTCAGCCAAGTTTGCGCGCCACTTCGCTTCAGCAGCAGACTGCTAGGAAACAGAGGAGATGCTGGTCCCCTGAGTTGCACAGACGATTTGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAGCAGCAACACCAAAGCAAATTAGAGAGCTCATGCAGGTTGATGGCCTGACTAATGATGAAGTCAAGAGCCATTTACAAAAATACCGGCTTCATACACGGAGAGTTCCAGCTGCAACTGGTAACCAATCAGTAGTGGTTCTTGGAGGTTTATGGATGTCTCAAGATCAGTACAATGACTCATCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAAAGTCCCCTTCATTTGGCTGCTACAGGGTCCAGGGGAGGGACTGAAGGTGACAGCATGGAAGATGAAGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATCATCATCATATGCAGCAGCAGCAGCACAAACCTGCAGGAAAAGTTGATGTATAG 1272 0.489 MGSVPAELSLDLRPPSFVPKTVADFLRHLSSSSGNKLATLHDFLARLEDELRKIDAFKRELPLSMLLLNDAISVLKAESQKCRPRDSPPVLEEFIPLKKERDQSEDDDNDDDDDDNNSNECKDKRNWMSSVQLWNNNTTATTTTINNNASDRKLLLKLQTKKSEEGQSVVEDPFQTCSNRNGGGRRAFMPFSRYSSSSSSVLVTAVGLGASTKEEKEDSVIMNRLSLLTTPSSVKEGCVSRGSRTSSNRAVSSSPPPTVQPSLRATSLQQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAATGNQSVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLAATGSRGGTEGDSMEDEEDARSESYSWKSHHHHMQQQQHKPAGKVDV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1771 423 MobiDBLite consensus disorder prediction 356 423 - -
Aed10g1771 423 MobiDBLite consensus disorder prediction 79 104 - -
Aed10g1771 423 MobiDBLite consensus disorder prediction 356 378 - -
Aed10g1771 423 Coils Coil 40 60 - -
Aed10g1771 423 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 408 IPR044787 GO:0003700|GO:0006355
Aed10g1771 423 SUPERFAMILY Homeodomain-like 272 333 IPR009057 -
Aed10g1771 423 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 275 330 IPR006447 GO:0003677
Aed10g1771 423 Gene3D - 274 332 - -
Aed10g1771 423 MobiDBLite consensus disorder prediction 233 277 - -
Aed10g1771 423 Pfam Myb-like DNA-binding domain 277 328 IPR001005 -
Aed10g1771 423 MobiDBLite consensus disorder prediction 79 123 - -
Aed10g1771 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 272 332 IPR017930 -
Aed10g1771 423 PANTHER TRANSCRIPTION FACTOR HHO6 7 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1771 Aed-Chr10 22232804 22235706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1771 6 351 G2-like Transcription Factor Family AT2G03500 40.443 1.26e-57 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed10g1771 Myb_DNA-binding 3.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1771 - - gmx:100806237 590.497