LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed10g1769	ATGATCACTAATTGTAGAGTTGTCATGATCTACTTCACTTTCTTCTTCTTGGTTCCTTTTGTTCATAGTAATAACCAGCTTGAGACCAGTTTCTATGATGGTTCATGCCCCAATTTGACCACGATTGTTAGATATGGTATTTGGTCAGCCATACAAAATGATAATAGAATGGCTGCGTCTCTCCTTCGTTTGCACTTTCACGATTGCATAGTAAATGTTGGAGGACCTTCTTGGTCTGTTGCATTTGGCCGAAGAGATGCAACAACAGCCAATAGGATGGAAGCTAATCAACAAATTCCCTCACCGTTCGAACCTCTAGATAACATCATTGCAAAGTTTGCTTCAAAGGGTCTTAACTTGAGGGATCTTGTAGCCCTTTCAGGAGCACATACAATTGGCTATGCTCGATGCTTAACCTTCAAAAGGAGACTCTTTGACTTCCAAGGCTCAGGCAGACCTGATCCGGTGCTTGCATCTTCACTTCTCCCAAAACTGCAAAGCACGTGTCCAGATAGACTAGACACTAATTCAAACACCTTCATTGCGCCTCTTGATGCTAACACCACTTTGACATTCGACAATGAGTATTACAGAAACCTCGTCTACAACAGAGGGCTTCTGGAATCTGACCAAGCACTGCTTGCGGATCGAAGGACTGCTTCTATGGCTTATTCTTACAGCACCGACCAATATTCATTCTATAACGACTTTGCTGCTTCCATGATTGGAGGGCCTTTTTGGCCTGTTCAATTGGGCAGAAGAGATGCAACAACAACCACTAAGGAGGCAGCTGAGCAACAACTTCCCTCACCAATTGAGCCTCTAGACAACATCACTGCAAAGTTTTTCTCCAAGGGTTTTAACTTGAAGGATGTTGTAGCCCTTTCAGGAGCACATACAATTGGTTTTGCAAGATGCTTCACCTTCAAAGGGAGACTTTTTGACTTCCAAGGCTCTGGCAGACCTGATCCCTCTCTTGAATTTTCACTTCTCTCAAAACTGCAAGACACGTGTCCAAATGAAGACGCCTCAAACAGCAACCTAGCACCTCTTGATGCTACAAGTACAGCCATGTTTGACAATGAGTATTATAGAAACATCTTATACAACACAGCTCTTCTAGAATCTGACCAAGCACTAATCAAGGATCGAAGGACTGCTCCTATGGTTAATGATTACAGCAACAACCGGTTCTCCTTCTACCGTGATTTTGCTGCATCCATGGTGAAGCTCACTAATGTTGGAGTGCTTACAGGAACACAAGGCCAAATTAGATATAAATGTGGCTCAGTAAACAACTACTAA	1305	0.4299	MITNCRVVMIYFTFFFLVPFVHSNNQLETSFYDGSCPNLTTIVRYGIWSAIQNDNRMAASLLRLHFHDCIVNVGGPSWSVAFGRRDATTANRMEANQQIPSPFEPLDNIIAKFASKGLNLRDLVALSGAHTIGYARCLTFKRRLFDFQGSGRPDPVLASSLLPKLQSTCPDRLDTNSNTFIAPLDANTTLTFDNEYYRNLVYNRGLLESDQALLADRRTASMAYSYSTDQYSFYNDFAASMIGGPFWPVQLGRRDATTTTKEAAEQQLPSPIEPLDNITAKFFSKGFNLKDVVALSGAHTIGFARCFTFKGRLFDFQGSGRPDPSLEFSLLSKLQDTCPNEDASNSNLAPLDATSTAMFDNEYYRNILYNTALLESDQALIKDRRTAPMVNDYSNNRFSFYRDFAASMVKLTNVGVLTGTQGQIRYKCGSVNNY	434

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed10g1769	434	PRINTS	Haem peroxidase superfamily signature	58	72	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Aed10g1769	434	PRINTS	Haem peroxidase superfamily signature	118	135	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Aed10g1769	434	PRINTS	Haem peroxidase superfamily signature	185	200	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Aed10g1769	434	ProSiteProfiles	Plant heme peroxidase family profile.	26	432	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Aed10g1769	434	SUPERFAMILY	Heme-dependent peroxidases	239	432	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Aed10g1769	434	ProSitePatterns	Peroxidases proximal heme-ligand signature.	291	301	IPR019793	-
	Aed10g1769	434	ProSitePatterns	Peroxidases proximal heme-ligand signature.	122	132	IPR019793	-
	Aed10g1769	434	PANTHER	PEROXIDASE 10	241	431	-	-
	Aed10g1769	434	ProSitePatterns	Peroxidases active site signature.	58	69	IPR019794	GO:0004601
	Aed10g1769	434	PRINTS	Plant peroxidase signature	60	80	IPR000823	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed10g1769	Aed-Chr10	22202679	22208383	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed10g1769	238	429	Peroxidase	AT1G49570	60.309	2.13e-77	243

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed10g1769	K00430		-	gmx:100805171	338.576

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