Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1761 ATGGCTCAAGCAAGTTCCAACGGGGATCTGAACCAGCAGGGTCAGCAAGGTCAGACTCAGACTCAGGCTCAGACTCAGTGGGCGGCGCAGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTACCCAGCAACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCATACGCCCACCCTCATTACCCCCCGCCGCCGCCGCCACAGCAGCAGCAGACCTCCTCCCACCATCATCACCACCACCACAACAGCAAACATTCCCCCGCCGCCGCCTCCTCCGCCGCCATCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTCGCCCACACCGGAGAGGTTGTGTCGGCCAAGGTCATTCGAAATAAGCAAACTGGTCAGTCCGAGGGATATGGATTTGTGGAGTTCTATACGCGACCAACGGCTGAGAAAGTCTTGCAGAACTACAATGGCGCCATGATGCCCAATACAGCAGATCAGCCATTCCGTCTGAATTGGGCCACCTTCAGTGCCGGGGAGAGACGTGCTGCTTCTTCTTCTGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATTGATGTTACCGATGCTATGCTGCAGGAGACTTTTGCTGGCCGATTTTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGCCGCTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAACGAGAGAACAAGGGCAATGACTGAAATGAATGGCGTCTATTGTTCTAGTAGGCCCATGCGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTATCAACAGCAATATTCTTCTCAAGGTTTGTTTATTCTTTGTTCTTATTGTGAATGCTTGAAGAATGCTGAGGAAGCAATTCAAGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATTGGAGATCTGATTCAAATGGAGGAGGCCATTATGGTGGTCATGGTCAGGGTTATGGAGGCCATGGATATGCTGTGAGACAGAATCAGGATATGGCCATGCAACCTGCTGCTGCTGCAATTCAAGGGGCTTCCTAA 1170 0.5128 MAQASSNGDLNQQGQQGQTQTQAQTQWAAQQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYAHPHYPPPPPPQQQQTSSHHHHHHHNSKHSPAAASSAAISSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYTRPTAEKVLQNYNGAMMPNTADQPFRLNWATFSAGERRAASSSDATSDLSIFVGDLAIDVTDAMLQETFAGRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQGLFILCSYCECLKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGGHYGGHGQGYGGHGYAVRQNQDMAMQPAAAAIQGAS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1761 389 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 314 387 - -
Aed10g1761 389 MobiDBLite consensus disorder prediction 69 103 - -
Aed10g1761 389 SUPERFAMILY RNA-binding domain, RBD 74 193 IPR035979 GO:0003676
Aed10g1761 389 MobiDBLite consensus disorder prediction 1 25 - -
Aed10g1761 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 288 IPR000504 GO:0003723
Aed10g1761 389 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 305 - -
Aed10g1761 389 MobiDBLite consensus disorder prediction 339 358 - -
Aed10g1761 389 Gene3D - 311 374 IPR012677 -
Aed10g1761 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 192 IPR000504 GO:0003723
Aed10g1761 389 CDD RRM2_SECp43_like 208 287 - -
Aed10g1761 389 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 314 387 - -
Aed10g1761 389 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 25 305 - -
Aed10g1761 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 280 IPR000504 GO:0003723
Aed10g1761 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 180 IPR000504 GO:0003723
Aed10g1761 389 Gene3D - 73 197 IPR012677 -
Aed10g1761 389 Gene3D - 198 302 IPR012677 -
Aed10g1761 389 CDD RRM1_SECp43_like 112 193 - -
Aed10g1761 389 SMART rrm1_1 210 284 IPR000504 GO:0003723
Aed10g1761 389 SMART rrm1_1 112 185 IPR000504 GO:0003723
Aed10g1761 389 SUPERFAMILY RNA-binding domain, RBD 209 342 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1761 Aed-Chr10 22147416 22152026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1761 113 290 Eukaryotic Initiation Factors Gene Family AT4G34110 26.316 2.21e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1761 - - gmx:100814564 362.844