Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1728 ATGGCTACCCCAAGTAAGTTGACATCAATAATAGCTTCAGACACTTTGGAACAGAAAGGGAAGACTATGACTGAATCAAATGGCAACATTCTTCAATGTCCTTTAAACCAGCGACTCCATAGCTCCTTAGATGGCCCAATAGCAATCCTTTGGGACATTGAAAATTGTCCTGTTCCATGTGATGTACGCCCTGAGGATGTAGCGGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTTTGGGGATTTCAATTCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTGTTGACGTTCCCAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTTGATATGTTCCTATTTGCTCTTGACAACCCTCCACCGTCCTCTATCATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTTCACATTCTTGGTCAGCGGGGATATACTGTAATTCTTGTCATCCCTGCTAACGTGGGTGTTTCTTCTGCCCTATGCAATGCCGGTAAATTTGTCTGGGACTGGCCTAGTGTGGTTCATGGAGAAGGCTTTGTACCCCCTTCGAAGGTGCCACCCCGTGGAGTTCCAGTTGAGCTTGCTGGATATTTGATGGGATGCCATATCAATGACAACTCCGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAACTATTATAACTCAAGGGAAATCTCAATGATGTCACAATCTCTGTCTGAATACAACAACTGTGGCACATCGAACACGACTTGCTTGCCAACAACTTTGAGATCACATAGCCTTCCATCTGTATTGAATGATGTTGCGGGAGGGTCTATGATGCCTTCAGGTGACCTTAATGAATGCCAGTTATGGGTACAACCAGGGGATTTAAACGGTCTCAAGGGGCAGCTGATAAGGTTGCTCGAACTTTCTGGAGGATGCCTGCCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAAATGTATGGGAGACCTCTTTATGTATCTGAATATGGGGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGAGTGATGCCATGGCTGTGGAAGGGAAAGGGAATCGTAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCCCCTCCTCTCTCTCTGGCAAAGAAAGATAAGAAAGGAAAGGGAGCCCAGGAAGAGAATGTGAATATTGTCACTGGTGGATGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCGTCGAAGAACATGATGAAAGAAGTTGCATAGGAAAGGGCAATCAAGGGAGAGCAGCCAGATGTGAAGTCGATGACCAAGTTATTGATCAGTTCAAGTATGAGCTGCAAGAGATTCTGGTAAGCTATTCTTGCCGAATATTCCTAGGTTGTTTTGAGGCTATATACCAACAGCGATACAAGAAACAACTGGAATATAAGAGATTTGGTGTAGACAAGTTGGAAGACTTGTTTGAGAAAGTGAGTGATGTGGTGGTATTGCATGAGGAACCAGTAAGCAAGAGGAAGTTCCTGGCAGCTGTGGGTACTTAG 1596 0.4417 MATPSKLTSIIASDTLEQKGKTMTESNGNILQCPLNQRLHSSLDGPIAILWDIENCPVPCDVRPEDVAGNIRMALRVHPVIKGAVMMFSAFGDFNSFPRRLREGCQRTGVKLVDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPANVGVSSALCNAGKFVWDWPSVVHGEGFVPPSKVPPRGVPVELAGYLMGCHINDNSDGQNEEEAIVYRGMSQNYYNSREISMMSQSLSEYNNCGTSNTTCLPTTLRSHSLPSVLNDVAGGSMMPSGDLNECQLWVQPGDLNGLKGQLIRLLELSGGCLPLARVPAEYQKMYGRPLYVSEYGAIKLVNLFKKMSDAMAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKGAQEENVNIVTGGCSSDEFSDEERVVVEEHDERSCIGKGNQGRAARCEVDDQVIDQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYKRFGVDKLEDLFEKVSDVVVLHEEPVSKRKFLAAVGT 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1728 531 CDD LOTUS 312 381 - -
Aed10g1728 531 Pfam OST-HTH/LOTUS domain 313 378 IPR025605 -
Aed10g1728 531 Pfam OST-HTH/LOTUS domain 458 519 IPR025605 -
Aed10g1728 531 Gene3D - 311 380 IPR041966 -
Aed10g1728 531 Gene3D - 452 523 IPR041966 -
Aed10g1728 531 Gene3D - 44 192 - -
Aed10g1728 531 PANTHER - 35 526 - -
Aed10g1728 531 ProSiteProfiles OST-type HTH domain profile. 456 530 IPR025605 -
Aed10g1728 531 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
Aed10g1728 531 CDD LOTUS 457 519 - -
Aed10g1728 531 CDD PIN_limkain_b1_N_like 46 172 - -
Aed10g1728 531 PANTHER LIMKAIN B LKAP 35 526 IPR024768 GO:0005777|GO:0010468|GO:1903231
Aed10g1728 531 Pfam NYN domain 46 186 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1728 Aed-Chr10 21910086 21911681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1728 43 197 C2H2 Transcription Factor Family AT5G61190 40.645 7.74e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1728 - - gmx:100818186 1003.82