Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1721 ATGCCTGGGAGTTTAGAACCGTTGGATTTGGGGGTTCACATACCCTACCACTTCAGATGCCCAATCTCGCTCGAGCTCATGCGAGACCCAGTAACCGTCTGCACCGGTCAAACCTACGACCGTCCCAGCATCGAGTCGTGGGTTAGCACCGGCAACACCACGTGTCCGGTGACACGAGCGACTCTCACCGACTTCACCCTAATCCCTAACCATACCCTCCGCCGCCTTATTCAGGAGTGGTGCGTCGCTAACCGCGCTTTTGGAGTTGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCCGCCTTGGTCCGCTCTCTTCTCAACCAGGCGTCTTCCGGTTCTGCCCCTGCTCACCTCCGCCTCAACTCGATTCGTCGACTCAGGCAACTCGCTCGCGACTCGGACAAGAATCGCTCCCTCATTGCCTCTCACAACGTTCGCCAGATCCTCCTCCCTATCGTCTTCAACGGTTCTGATGAGTTGAAACACGAGTCGCTCGCGCTGATTGTTATGTTCCCGCTCGGCGAGACGGAATGCGCTTTTGTCGCATCCGACTCGGAGAAGATTCACTACCTCTCGCGGATGTTGACGCATAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGCTGATTGAAATCGTCGTCGCCGGGACGCACTCGCCGGAGCTCCGCGCGGAGGTGAGCAATGTCGATGAAATCTACGACGGCGTCGTGGACCTGCTCCGGAGCCCGATCCCGCATCCGCGCGCGCTCAAAATCGGGATCAAGGCCTTGTTCGCGCTCTGTCTGGTGAAGCAGACGCGGCACAAGGCGGTGGCCGCCGGAGCGCCGGCGGTGCTCGTGGACCGGCTCGCGGACTTCGAGAAGTACGACGCGGAGAGGGCGCTCGCCACTGTGGAGCTCCTCTGCCGGATTCCGGCGGGATGCGCGGCGTTCGCGGAGCACGCGCTGACGGTACCGATGCTCGTGAAGATAATTCTGAAAATCTCCGACCGCGCGACGGAGTACGCCGCTGGAGCGCTGCTCTCGCTGTGCTCCGAGTCGGAGTTTTGCCAGCGTGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTTGTGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCTATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTCGTTGTGGTTCCCTTTTGA 1242 0.6039 MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRPSIESWVSTGNTTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQASSGSAPAHLRLNSIRRLRQLARDSDKNRSLIASHNVRQILLPIVFNGSDELKHESLALIVMFPLGETECAFVASDSEKIHYLSRMLTHNSFDVRVNSAALIEIVVAGTHSPELRAEVSNVDEIYDGVVDLLRSPIPHPRALKIGIKALFALCLVKQTRHKAVAAGAPAVLVDRLADFEKYDAERALATVELLCRIPAGCAAFAEHALTVPMLVKIILKISDRATEYAAGALLSLCSESEFCQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDSIGNSDDFACSQVVVVPF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1721 413 Gene3D - 238 389 IPR011989 -
Aed10g1721 413 SUPERFAMILY ARM repeat 103 388 IPR016024 -
Aed10g1721 413 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Aed10g1721 413 CDD RING-Ubox_PUB 18 59 IPR045210 -
Aed10g1721 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 83 IPR013083 -
Aed10g1721 413 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
Aed10g1721 413 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Aed10g1721 413 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Aed10g1721 413 Gene3D - 84 232 IPR011989 -
Aed10g1721 413 SUPERFAMILY RING/U-box 12 90 - -
Aed10g1721 413 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1721 Aed-Chr10 21857516 21858757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1721 1 413 U-box Gene Family AT1G49780 66.274 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1721 - - gmx:100810176 756.903